Mercurial > repos > devteam > picard
comparison picard_BedToIntervalList.xml @ 28:c943f4a04af0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
| author | iuc |
|---|---|
| date | Mon, 25 Sep 2023 08:31:14 +0000 |
| parents | a5a13ea16d17 |
| children |
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| 27:fdca9493e09b | 28:c943f4a04af0 |
|---|---|
| 16 #if str( $reference_source.reference_source_selector ) == "history": | 16 #if str( $reference_source.reference_source_selector ) == "history": |
| 17 | 17 |
| 18 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" | 18 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" |
| 19 QUIET=true | 19 QUIET=true |
| 20 VERBOSITY=ERROR | 20 VERBOSITY=ERROR |
| 21 @TMPDIR_OPTION@ | |
| 22 | 21 |
| 23 && | 22 && |
| 24 | 23 |
| 25 #else: | 24 #else: |
| 26 | 25 |
| 35 OUTPUT="${outFile}" | 34 OUTPUT="${outFile}" |
| 36 | 35 |
| 37 SEQUENCE_DICTIONARY="${picard_dict}" | 36 SEQUENCE_DICTIONARY="${picard_dict}" |
| 38 QUIET=true | 37 QUIET=true |
| 39 VERBOSITY=ERROR | 38 VERBOSITY=ERROR |
| 40 @TMPDIR_OPTION@ | |
| 41 | 39 |
| 42 ]]></command> | 40 ]]></command> |
| 43 | 41 |
| 44 <inputs> | 42 <inputs> |
| 45 | 43 |