Mercurial > repos > devteam > picard
comparison picard_MarkDuplicates.xml @ 24:e65f2d5fd3d8 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 92e89c89178482870c14cf15f38fbfd4470aa130"
| author | iuc |
|---|---|
| date | Sat, 15 Jan 2022 12:38:18 +0000 |
| parents | c1aaa5a116d0 |
| children | fdca9493e09b |
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| 23:4740a2548206 | 24:e65f2d5fd3d8 |
|---|---|
| 1 <tool name="MarkDuplicates" id="picard_MarkDuplicates" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> | 1 <tool name="MarkDuplicates" id="picard_MarkDuplicates" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> |
| 2 <description>examine aligned records in BAM datasets to locate duplicate molecules</description> | 2 <description>examine aligned records in BAM datasets to locate duplicate molecules</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
| 5 <token name="@WRAPPER_VERSION@">2</token> | 5 <token name="@WRAPPER_VERSION@">3</token> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 8 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
| 9 @java_options@ | 9 @java_options@ |
| 10 @symlink_element_identifier@ | 10 @symlink_element_identifier@ |
| 32 #if $barcode_tag: | 32 #if $barcode_tag: |
| 33 BARCODE_TAG='${barcode_tag}' | 33 BARCODE_TAG='${barcode_tag}' |
| 34 #end if | 34 #end if |
| 35 | 35 |
| 36 VALIDATION_STRINGENCY='${validation_stringency}' | 36 VALIDATION_STRINGENCY='${validation_stringency}' |
| 37 TAGGING_POLICY=All | |
| 37 QUIET=true | 38 QUIET=true |
| 38 VERBOSITY=ERROR | 39 VERBOSITY=ERROR |
| 39 @TMPDIR_OPTION@ | 40 @TMPDIR_OPTION@ |
| 40 | 41 |
| 41 ]]></command> | 42 ]]></command> |