Mercurial > repos > devteam > picard
comparison picard_MarkDuplicates.xml @ 8:e417b1d6288d draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit bf94a1505c131fb3f67c867b6e1d886780efa42e
| author | devteam |
|---|---|
| date | Tue, 06 Dec 2016 10:04:26 -0500 |
| parents | 08f69add4d06 |
| children | 41b8d087a2d2 |
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| 7:08f69add4d06 | 8:e417b1d6288d |
|---|---|
| 4 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
| 8 @java_options@ | 8 @java_options@ |
| 9 | 9 @symlink_element_identifier@ |
| 10 picard | 10 picard |
| 11 MarkDuplicates | 11 MarkDuplicates |
| 12 | 12 |
| 13 INPUT="${inputFile}" | 13 INPUT='$inputFile.element_identifier' |
| 14 OUTPUT="${outFile}" | 14 OUTPUT="${outFile}" |
| 15 | 15 |
| 16 METRICS_FILE="${metrics_file}" | 16 METRICS_FILE="${metrics_file}" |
| 17 #for $element in $comments: | 17 #for $element in $comments: |
| 18 COMMENT="${element.comment}" | 18 COMMENT="${element.comment}" |