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comparison picard_QualityScoreDistribution.xml @ 15:a5a13ea16d17 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author iuc
date Tue, 19 Jun 2018 11:28:30 -0400
parents 486d7500da69
children c943f4a04af0
comparison
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14:486d7500da69 15:a5a13ea16d17
1 <tool name="QualityScoreDistribution" id="picard_QualityScoreDistribution" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> 1 <tool name="QualityScoreDistribution" id="picard_QualityScoreDistribution" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description>chart quality score distribution</description> 2 <description>chart quality score distribution</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 <token name="@WRAPPER_VERSION@">0</token> 5 <token name="@WRAPPER_VERSION@">1</token>
6 </macros> 6 </macros>
7 <expand macro="requirements"> 7 <expand macro="requirements">
8 <requirement type="package" version="3.4.1">r-base</requirement> 8 <requirement type="package" version="3.4.1">r-base</requirement>
9 </expand> 9 </expand>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
28 ASSUME_SORTED="${assume_sorted}" 28 ASSUME_SORTED="${assume_sorted}"
29 29
30 VALIDATION_STRINGENCY="${validation_stringency}" 30 VALIDATION_STRINGENCY="${validation_stringency}"
31 QUIET=true 31 QUIET=true
32 VERBOSITY=ERROR 32 VERBOSITY=ERROR
33 @TMPDIR_OPTION@
33 34
34 ]]></command> 35 ]]></command>
35 <inputs> 36 <inputs>
36 <param format="sam,bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/> 37 <param format="sam,bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/>
37 <conditional name="reference_source"> 38 <conditional name="reference_source">