Mercurial > repos > devteam > picard
comparison picard_NormalizeFasta.xml @ 15:a5a13ea16d17 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author | iuc |
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date | Tue, 19 Jun 2018 11:28:30 -0400 |
parents | 486d7500da69 |
children | c943f4a04af0 |
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14:486d7500da69 | 15:a5a13ea16d17 |
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1 <tool name="NormalizeFasta" id="picard_NormalizeFasta" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> | 1 <tool name="NormalizeFasta" id="picard_NormalizeFasta" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> |
2 <description>normalize fasta datasets</description> | 2 <description>normalize fasta datasets</description> |
3 <macros> | 3 <macros> |
4 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
5 <token name="@WRAPPER_VERSION@">0</token> | 5 <token name="@WRAPPER_VERSION@">1</token> |
6 </macros> | 6 </macros> |
7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
8 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
9 @java_options@ | 9 @java_options@ |
10 | 10 |
20 LINE_LENGTH="${line_length}" | 20 LINE_LENGTH="${line_length}" |
21 TRUNCATE_SEQUENCE_NAMES_AT_WHITESPACE="${truncate_sequence_names_at_whitespaces}" | 21 TRUNCATE_SEQUENCE_NAMES_AT_WHITESPACE="${truncate_sequence_names_at_whitespaces}" |
22 | 22 |
23 QUIET=true | 23 QUIET=true |
24 VERBOSITY=ERROR | 24 VERBOSITY=ERROR |
25 @TMPDIR_OPTION@ | |
25 | 26 |
26 ]]></command> | 27 ]]></command> |
27 <inputs> | 28 <inputs> |
28 <param format="fasta" name="inputFile" type="data" label="FASTA dataset or dataset collection" help="If empty, upload or import a FASTA dataset" /> | 29 <param format="fasta" name="inputFile" type="data" label="FASTA dataset or dataset collection" help="If empty, upload or import a FASTA dataset" /> |
29 <param name="line_length" type="integer" value="100" min="1" max="200" label="The line length to be used for the output fasta file" help="LINE_LENGTH; default=100"/> | 30 <param name="line_length" type="integer" value="100" min="1" max="200" label="The line length to be used for the output fasta file" help="LINE_LENGTH; default=100"/> |