Mercurial > repos > devteam > picard
comparison picard_CollectWgsMetrics.xml @ 15:a5a13ea16d17 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
| author | iuc |
|---|---|
| date | Tue, 19 Jun 2018 11:28:30 -0400 |
| parents | 486d7500da69 |
| children | c943f4a04af0 |
comparison
equal
deleted
inserted
replaced
| 14:486d7500da69 | 15:a5a13ea16d17 |
|---|---|
| 1 <tool name="CollectWgsMetrics" id="picard_CollectWgsMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> | 1 <tool name="CollectWgsMetrics" id="picard_CollectWgsMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> |
| 2 <description>compute metrics for evaluating of whole genome sequencing experiments</description> | 2 <description>compute metrics for evaluating of whole genome sequencing experiments</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
| 5 <token name="@WRAPPER_VERSION@">0</token> | 5 <token name="@WRAPPER_VERSION@">1</token> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 8 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
| 9 @java_options@ | 9 @java_options@ |
| 10 @symlink_element_identifier@ | 10 @symlink_element_identifier@ |
| 24 COVERAGE_CAP="${coverage_cap}" | 24 COVERAGE_CAP="${coverage_cap}" |
| 25 | 25 |
| 26 VALIDATION_STRINGENCY="${validation_stringency}" | 26 VALIDATION_STRINGENCY="${validation_stringency}" |
| 27 QUIET=true | 27 QUIET=true |
| 28 VERBOSITY=ERROR | 28 VERBOSITY=ERROR |
| 29 @TMPDIR_OPTION@ | |
| 29 | 30 |
| 30 ]]></command> | 31 ]]></command> |
| 31 <inputs> | 32 <inputs> |
| 32 <param format="sam,bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/> | 33 <param format="sam,bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/> |
| 33 <conditional name="reference_source"> | 34 <conditional name="reference_source"> |