Mercurial > repos > devteam > picard
comparison picard_AddCommentsToBam.xml @ 15:a5a13ea16d17 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
| author | iuc |
|---|---|
| date | Tue, 19 Jun 2018 11:28:30 -0400 |
| parents | 486d7500da69 |
| children | c943f4a04af0 |
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| 14:486d7500da69 | 15:a5a13ea16d17 |
|---|---|
| 1 <tool name="AddCommentsToBam" id="picard_AddCommentsToBam" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> | 1 <tool name="AddCommentsToBam" id="picard_AddCommentsToBam" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> |
| 2 <description>add comments to BAM dataset</description> | 2 <description>add comments to BAM dataset</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
| 5 <token name="@WRAPPER_VERSION@">0</token> | 5 <token name="@WRAPPER_VERSION@">1</token> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 8 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
| 9 @java_options@ | 9 @java_options@ |
| 10 @symlink_element_identifier@ | 10 @symlink_element_identifier@ |
| 15 #for $element in $comments: | 15 #for $element in $comments: |
| 16 COMMENT="${element.comment}" | 16 COMMENT="${element.comment}" |
| 17 #end for | 17 #end for |
| 18 QUIET=true | 18 QUIET=true |
| 19 VERBOSITY=ERROR | 19 VERBOSITY=ERROR |
| 20 @TMPDIR_OPTION@ | |
| 20 VALIDATION_STRINGENCY=${validation_stringency} | 21 VALIDATION_STRINGENCY=${validation_stringency} |
| 21 ]]></command> | 22 ]]></command> |
| 22 | 23 |
| 23 <inputs> | 24 <inputs> |
| 24 <param format="bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset" /> | 25 <param format="bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset" /> |