Mercurial > repos > devteam > picard

comparison test-data/picard_CollectInsertSizeMetrics_test1.tab @ 3:52fdfc45590a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
author devteam
date Thu, 16 Jul 2015 15:32:31 -0400
parents
children 486d7500da69
comparison
equal deleted inserted replaced
2:93ace7e49295 3:52fdfc45590a
1 ## htsjdk.samtools.metrics.StringHeader
2 # picard.analysis.CollectInsertSizeMetrics HISTOGRAM_FILE=/Users/anton/galaxy-central/database/files/000/dataset_699.dat DEVIATIONS=10.0 HISTOGRAM_WIDTH=500 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_698.dat REFERENCE_SEQUENCE=/Users/anton/temp/mt.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
3 ## htsjdk.samtools.metrics.StringHeader
4 # Started on: Sat Oct 04 10:14:44 EDT 2014
5
6 ## METRICS CLASS picard.analysis.InsertSizeMetrics
7 MEDIAN_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP
8 200 28 112 251 193.969697 36.171207 99 FR 7 15 33 43 57 73 83 99 125 177
9
10 ## HISTOGRAM java.lang.Integer
11 insert_size All_Reads.fr_count
12 112 1
13 120 1
14 132 2
15 134 2
16 138 5
17 139 1
18 140 1
19 141 1
20 151 2
21 156 4
22 157 1
23 159 1
24 161 2
25 169 1
26 172 1
27 173 1
28 177 3
29 179 3
30 182 3
31 184 4
32 185 2
33 187 1
34 192 1
35 193 1
36 194 3
37 200 2
38 201 5
39 203 8
40 205 1
41 208 1
42 213 4
43 216 1
44 222 1
45 228 5
46 229 2
47 230 1
48 231 3
49 233 1
50 236 2
51 238 2
52 241 4
53 242 3
54 250 2
55 251 3
56