Mercurial > repos > devteam > picard
comparison picard_SortSam.xml @ 14:486d7500da69 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
| author | iuc |
|---|---|
| date | Mon, 16 Apr 2018 21:27:09 -0400 |
| parents | 41b8d087a2d2 |
| children | a5a13ea16d17 |
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| 13:c7dd8d7946b8 | 14:486d7500da69 |
|---|---|
| 1 <tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.1"> | 1 <tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> |
| 2 <description>sort SAM/BAM dataset</description> | 2 <description>sort SAM/BAM dataset</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
| 5 <token name="@WRAPPER_VERSION@">0</token> | |
| 5 </macros> | 6 </macros> |
| 6 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 7 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
| 8 #if $sort_order == "queryname": | 9 #if $sort_order == "queryname": |
| 9 #set $output = "output.sam" | 10 #set $output = "output.sam" |
| 79 SO=SortOrder Sort order of output file. You can either sort by queryname or by coordinate. | 80 SO=SortOrder Sort order of output file. You can either sort by queryname or by coordinate. |
| 80 | 81 |
| 81 @more_info@ | 82 @more_info@ |
| 82 | 83 |
| 83 </help> | 84 </help> |
| 85 <expand macro="citations" /> | |
| 84 </tool> | 86 </tool> |