Mercurial > repos > devteam > picard
comparison picard_ReplaceSamHeader.xml @ 23:4740a2548206 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author | iuc |
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date | Wed, 01 Sep 2021 07:58:57 +0000 |
parents | a5a13ea16d17 |
children | e65f2d5fd3d8 |
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22:81de93de916f | 23:4740a2548206 |
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1 <tool name="ReplaceSamHeader" id="picard_ReplaceSamHeader" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> | 1 <tool name="ReplaceSamHeader" id="picard_ReplaceSamHeader" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> |
2 <description>replace header in a SAM/BAM dataset</description> | 2 <description>replace header in a SAM/BAM dataset</description> |
3 <macros> | 3 <xrefs> |
4 <import>picard_macros.xml</import> | 4 <xref type="bio.tools">picard_replacesamheader</xref> |
5 <token name="@WRAPPER_VERSION@">1</token> | 5 </xrefs> |
6 </macros> | 6 <macros> |
7 <expand macro="requirements" /> | 7 <import>picard_macros.xml</import> |
8 <command detect_errors="exit_code"><![CDATA[ | 8 <token name="@WRAPPER_VERSION@">1</token> |
9 </macros> | |
10 <expand macro="requirements" /> | |
11 <command detect_errors="exit_code"><![CDATA[ | |
9 @java_options@ | 12 @java_options@ |
10 @symlink_element_identifier@ | 13 @symlink_element_identifier@ |
11 | 14 |
12 ## Two lines below are due to the fact that picard likes fasta files to have extension .fa | 15 ## Two lines below are due to the fact that picard likes fasta files to have extension .fa |
13 #set $fasta_file="local_fasta.fa" | 16 #set $fasta_file="local_fasta.fa" |