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comparison picard_ReorderSam.xml @ 23:4740a2548206 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Wed, 01 Sep 2021 07:58:57 +0000
parents a5a13ea16d17
children e65f2d5fd3d8
comparison
equal deleted inserted replaced
22:81de93de916f 23:4740a2548206
1 <tool name="ReorderSam" id="picard_ReorderSam" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> 1 <tool name="ReorderSam" id="picard_ReorderSam" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description>reorder reads to match ordering in reference sequences</description> 2 <description>reorder reads to match ordering in reference sequences</description>
3 <macros> 3 <xrefs>
4 <import>picard_macros.xml</import> 4 <xref type="bio.tools">picard_reordersam</xref>
5 <token name="@WRAPPER_VERSION@">1</token> 5 </xrefs>
6 </macros> 6 <macros>
7 <expand macro="requirements" /> 7 <import>picard_macros.xml</import>
8 <command detect_errors="exit_code"><![CDATA[ 8 <token name="@WRAPPER_VERSION@">1</token>
9 </macros>
10 <expand macro="requirements" />
11 <command detect_errors="exit_code"><![CDATA[
9 @java_options@ 12 @java_options@
10 @symlink_element_identifier@ 13 @symlink_element_identifier@
11 #set $picard_dict = "localref.dict" 14 #set $picard_dict = "localref.dict"
12 #set $ref_fasta = "localref.fa" ## This is done because picards "likes" .fa extension 15 #set $ref_fasta = "localref.fa" ## This is done because picards "likes" .fa extension
13 16