Mercurial > repos > devteam > picard
comparison picard_SortSam.xml @ 9:41b8d087a2d2 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author | devteam |
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date | Wed, 07 Dec 2016 14:56:16 -0500 |
parents | e417b1d6288d |
children | 486d7500da69 |
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8:e417b1d6288d | 9:41b8d087a2d2 |
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13 #end if | 13 #end if |
14 @java_options@ | 14 @java_options@ |
15 @symlink_element_identifier@ | 15 @symlink_element_identifier@ |
16 picard | 16 picard |
17 SortSam | 17 SortSam |
18 INPUT='$inputFile.element_identifier' | 18 INPUT='$escaped_element_identifier' |
19 OUTPUT='${output}' | 19 OUTPUT='${output}' |
20 SORT_ORDER="${sort_order}" | 20 SORT_ORDER="${sort_order}" |
21 QUIET=true | 21 QUIET=true |
22 VERBOSITY=ERROR | 22 VERBOSITY=ERROR |
23 VALIDATION_STRINGENCY=${validation_stringency} | 23 VALIDATION_STRINGENCY=${validation_stringency} |