Mercurial > repos > devteam > picard
comparison picard_ReorderSam.xml @ 9:41b8d087a2d2 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
| author | devteam |
|---|---|
| date | Wed, 07 Dec 2016 14:56:16 -0500 |
| parents | e417b1d6288d |
| children | 486d7500da69 |
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| 8:e417b1d6288d | 9:41b8d087a2d2 |
|---|---|
| 26 | 26 |
| 27 #end if | 27 #end if |
| 28 | 28 |
| 29 picard | 29 picard |
| 30 ReorderSam | 30 ReorderSam |
| 31 INPUT='$inputFile.element_identifier' | 31 INPUT='$escaped_element_identifier' |
| 32 OUTPUT="${outFile}" | 32 OUTPUT="${outFile}" |
| 33 REFERENCE="${ref_fasta}" | 33 REFERENCE="${ref_fasta}" |
| 34 ALLOW_INCOMPLETE_DICT_CONCORDANCE="${allow_incomplete_dict_concordance}" | 34 ALLOW_INCOMPLETE_DICT_CONCORDANCE="${allow_incomplete_dict_concordance}" |
| 35 ALLOW_CONTIG_LENGTH_DISCORDANCE="${allow_contig_length_discordance}" | 35 ALLOW_CONTIG_LENGTH_DISCORDANCE="${allow_contig_length_discordance}" |
| 36 | 36 |