Mercurial > repos > devteam > picard
comparison picard_MeanQualityByCycle.xml @ 9:41b8d087a2d2 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
| author | devteam |
|---|---|
| date | Wed, 07 Dec 2016 14:56:16 -0500 |
| parents | e417b1d6288d |
| children | 486d7500da69 |
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| 8:e417b1d6288d | 9:41b8d087a2d2 |
|---|---|
| 18 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) | 18 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) |
| 19 #end if | 19 #end if |
| 20 | 20 |
| 21 picard | 21 picard |
| 22 MeanQualityByCycle | 22 MeanQualityByCycle |
| 23 INPUT='$inputFile.element_identifier' | 23 INPUT='$escaped_element_identifier' |
| 24 OUTPUT="${outFile}" | 24 OUTPUT="${outFile}" |
| 25 CHART_OUTPUT="${pdfFile}" | 25 CHART_OUTPUT="${pdfFile}" |
| 26 REFERENCE_SEQUENCE="${reference_fasta_filename}" | 26 REFERENCE_SEQUENCE="${reference_fasta_filename}" |
| 27 ALIGNED_READS_ONLY="${aligned_reads_only}" | 27 ALIGNED_READS_ONLY="${aligned_reads_only}" |
| 28 PF_READS_ONLY="${pf_reads_only}" | 28 PF_READS_ONLY="${pf_reads_only}" |