Mercurial > repos > devteam > picard

comparison picard_CollectRnaSeqMetrics.xml @ 9:41b8d087a2d2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author devteam
date Wed, 07 Dec 2016 14:56:16 -0500
parents e417b1d6288d
children 126c30841c38
comparison
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8:e417b1d6288d 9:41b8d087a2d2
44 IGNORE_SEQUENCE="${sequence_to_ignore.sequence}" 44 IGNORE_SEQUENCE="${sequence_to_ignore.sequence}"
45 #end for 45 #end for
46 46
47 RRNA_FRAGMENT_PERCENTAGE="${rrna_fragment_percentage}" 47 RRNA_FRAGMENT_PERCENTAGE="${rrna_fragment_percentage}"
48 METRIC_ACCUMULATION_LEVEL="${metric_accumulation_level}" 48 METRIC_ACCUMULATION_LEVEL="${metric_accumulation_level}"
49 INPUT='$inputFile.element_identifier' 49 INPUT='$escaped_element_identifier'
50 OUTPUT="${outFile}" 50 OUTPUT="${outFile}"
51 REFERENCE_SEQUENCE="${reference_fasta_filename}" 51 REFERENCE_SEQUENCE="${reference_fasta_filename}"
52 ASSUME_SORTED="${assume_sorted}" 52 ASSUME_SORTED="${assume_sorted}"
53 53
54 QUIET=true 54 QUIET=true