Mercurial > repos > devteam > picard
comparison picard_CollectGcBiasMetrics.xml @ 9:41b8d087a2d2 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author | devteam |
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date | Wed, 07 Dec 2016 14:56:16 -0500 |
parents | e417b1d6288d |
children | 486d7500da69 |
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8:e417b1d6288d | 9:41b8d087a2d2 |
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19 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) | 19 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) |
20 #end if | 20 #end if |
21 | 21 |
22 picard | 22 picard |
23 CollectGcBiasMetrics | 23 CollectGcBiasMetrics |
24 INPUT='$inputFile.element_identifier' | 24 INPUT='$escaped_element_identifier' |
25 OUTPUT="${outFile}" | 25 OUTPUT="${outFile}" |
26 CHART_OUTPUT="${pdfFile}" | 26 CHART_OUTPUT="${pdfFile}" |
27 SUMMARY_OUTPUT="${summaryFile}" | 27 SUMMARY_OUTPUT="${summaryFile}" |
28 WINDOW_SIZE="${window_size}" | 28 WINDOW_SIZE="${window_size}" |
29 MINIMUM_GENOME_FRACTION="${minimum_genome_fraction}" | 29 MINIMUM_GENOME_FRACTION="${minimum_genome_fraction}" |