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comparison picard_CollectBaseDistributionByCycle.xml @ 9:41b8d087a2d2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author devteam
date Wed, 07 Dec 2016 14:56:16 -0500
parents e417b1d6288d
children 486d7500da69
comparison
equal deleted inserted replaced
8:e417b1d6288d 9:41b8d087a2d2
19 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) 19 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path )
20 #end if 20 #end if
21 21
22 picard 22 picard
23 CollectBaseDistributionByCycle 23 CollectBaseDistributionByCycle
24 INPUT='$inputFile.element_identifier' 24 INPUT='$escaped_element_identifier'
25 OUTPUT="${outFile}" 25 OUTPUT="${outFile}"
26 CHART_OUTPUT="${pdfFile}" 26 CHART_OUTPUT="${pdfFile}"
27 ALIGNED_READS_ONLY="${aligned_reads_only}" 27 ALIGNED_READS_ONLY="${aligned_reads_only}"
28 PF_READS_ONLY="${pf_reads_only}" 28 PF_READS_ONLY="${pf_reads_only}"
29 REFERENCE_SEQUENCE="${reference_fasta_filename}" 29 REFERENCE_SEQUENCE="${reference_fasta_filename}"