comparison picard_CollectAlignmentSummaryMetrics.xml @ 9:41b8d087a2d2 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f

8:e417b1d6288d

        #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path )
    #end if

    picard
    CollectAlignmentSummaryMetrics
    INPUT='$inputFile.element_identifier'
    OUTPUT="${outFile}"
    MAX_INSERT_SIZE=${maxinsert}
    #for $sequence in $adapters:
        ADAPTER_SEQUENCE="${sequence.adapter}"
    #end for

9:41b8d087a2d2

        #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path )
    #end if

    picard
    CollectAlignmentSummaryMetrics
    INPUT='$escaped_element_identifier'
    OUTPUT="${outFile}"
    MAX_INSERT_SIZE=${maxinsert}
    #for $sequence in $adapters:
        ADAPTER_SEQUENCE="${sequence.adapter}"
    #end for