comparison picard_SortSam.xml @ 5:2f3cdd537834 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 6e148b31fed1b322ce720804d8525088ec6d43f9

4:2589e6207cb4

<tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.0">
  <description>sort SAM/BAM dataset</description>
  <macros>
    <import>picard_macros.xml</import>
  </macros>
  <expand macro="requirements" />

  <inputs>
    <param name="inputFile" type="data" format="sam,bam" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/>
    <param name="sort_order" type="select" display="radio" label="Sort order" help="SORT_ORDER; default=coordinate">
      <option value="coordinate" selected="True">Coordinate</option>
      <option value="queryname">Queryname</option>
      <option value="unsorted">Unsorted</option>
    </param>
    <expand macro="VS" />
  </inputs>
  
  <outputs>

@dataset_collections@

@description@

  SORT_ORDER=SortOrder
  SO=SortOrder                  Sort order of output file  Required. Possible values: {unsorted, queryname, coordinate} 
 
 @more_info@

  </help>
</tool>

5:2f3cdd537834

<tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.1">
  <description>sort SAM/BAM dataset</description>
  <macros>
    <import>picard_macros.xml</import>
  </macros>
  <expand macro="requirements" />

  <inputs>
    <param name="inputFile" type="data" format="sam,bam" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/>
    <param name="sort_order" type="select" display="radio" label="Sort order" help="SORT_ORDER; default=coordinate">
      <option value="coordinate" selected="True">Coordinate</option>
      <option value="queryname">Queryname</option>
    </param>
    <expand macro="VS" />
  </inputs>
  
  <outputs>

@dataset_collections@

@description@

  SORT_ORDER=SortOrder
  SO=SortOrder          Sort order of output file. You can either sort by queryname or by coordinate.
 
 @more_info@

  </help>
</tool>