# HG changeset patch
# User devteam
# Date 1385306421 18000
# Node ID 4ada8c6f29703ec782c9fa2421df3310fac216db
# Parent  a44e7b401f4f871b5fba8b27bca1d15065256bd3
Uploaded

diff -r a44e7b401f4f -r 4ada8c6f2970 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Nov 20 13:26:56 2013 -0500
+++ b/tool_dependencies.xml	Sun Nov 24 10:20:21 2013 -0500
@@ -6,6 +6,8 @@
                 <action type="download_by_url">http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.11.tar.gz</action>
                 <action type="shell_command">make</action>
                 <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action>
+                <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. -->
+                <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable>
                 </action>