Mercurial > repos > devteam > package_ucsc_viz

changeset 0:1d76d9d48045 draft default tip

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Uploaded
author devteam
date Mon, 12 May 2014 16:52:27 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 39 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon May 12 16:52:27 2014 -0400
@@ -0,0 +1,39 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="ucsc_galaxy_viz" version="0.1">
+        <install version="1.0">
+            <actions_group>
+                <actions os="linux" architecture="x86_64">
+                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig</action>
+                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</action>
+                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit</action>
+                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa</action>
+                    <action type="shell_command">chmod ugo+x *</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+
+                <actions os="darwin" architecture="x86_64">
+                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigToBigWig</action>
+                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGraphToBigWig</action>
+                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTwoBit</action>
+                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitToFa</action>
+                    <action type="shell_command">chmod ugo+x *</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    </action>
+                </actions_group>
+        </install>
+        <readme>
+            UCSC tools needed for by Galaxy visualization data providers.
+        </readme>
+    </package>
+</tool_dependency>
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