comparison tool_dependencies.xml @ 0:1d76d9d48045 draft default tip

Uploaded

0:1d76d9d48045

<?xml version="1.0"?>
<tool_dependency>
    <package name="ucsc_galaxy_viz" version="0.1">
        <install version="1.0">
            <actions_group>
                <actions os="linux" architecture="x86_64">
                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig</action>
                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</action>
                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit</action>
                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa</action>
                    <action type="shell_command">chmod ugo+x *</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                </actions>

                <actions os="darwin" architecture="x86_64">
                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigToBigWig</action>
                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGraphToBigWig</action>
                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTwoBit</action>
                    <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitToFa</action>
                    <action type="shell_command">chmod ugo+x *</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                </actions>

                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    </action>
                </actions_group>
        </install>
        <readme>
            UCSC tools needed for by Galaxy visualization data providers.
        </readme>
    </package>
</tool_dependency>