Mercurial > repos > devteam > package_samtools_0_1_18
comparison tool_dependencies.xml @ 2:c0f72bdba484 draft default tip
Uploaded updated tool dependency definition that copies header files to INSTALL_DIR/include/bam/
| author | devteam |
|---|---|
| date | Mon, 30 Sep 2013 14:20:29 -0400 |
| parents | ecf4ca7388a5 |
| children |
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| 1:ecf4ca7388a5 | 2:c0f72bdba484 |
|---|---|
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="samtools" version="0.1.18"> | 3 <package name="samtools" version="0.1.18"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions_group> | 5 <actions_group> |
| 6 <actions os="linux" architecture="i386"> | 6 <actions os="linux" architecture="i386"> |
| 7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/samtools/samtools-0.1.18-linux-i386.tgz</action> | 7 <action type="download_by_url" target_filename="samtools-0.1.18.tgz">http://depot.galaxyproject.org/package/linux/i386/samtools/samtools-0.1.18-linux-i386.tgz</action> |
| 8 <action type="move_directory_files"> | 8 <action type="move_directory_files"> |
| 9 <source_directory>.</source_directory> | 9 <source_directory>.</source_directory> |
| 10 <destination_directory>$INSTALL_DIR</destination_directory> | 10 <destination_directory>$INSTALL_DIR</destination_directory> |
| 11 </action> | 11 </action> |
| 12 </actions> | 12 </actions> |
| 13 <actions os="linux" architecture="x86_64"> | 13 <actions os="linux" architecture="x86_64"> |
| 14 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/samtools/samtools-0.1.18-linux-x86_64.tgz</action> | 14 <action type="download_by_url" target_filename="samtools-0.1.18.tgz">http://depot.galaxyproject.org/package/linux/x86_64/samtools/samtools-0.1.18-linux-x86_64.tgz</action> |
| 15 <action type="move_directory_files"> | 15 <action type="move_directory_files"> |
| 16 <source_directory>.</source_directory> | 16 <source_directory>.</source_directory> |
| 17 <destination_directory>$INSTALL_DIR</destination_directory> | 17 <destination_directory>$INSTALL_DIR</destination_directory> |
| 18 </action> | 18 </action> |
| 19 </actions> | 19 </actions> |
| 20 <actions os="darwin" architecture="i386"> | 20 <actions os="darwin" architecture="i386"> |
| 21 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/i386/samtools/samtools-0.1.18-Darwin-i386.tgz</action> | 21 <action type="download_by_url" target_filename="samtools-0.1.18.tgz">http://depot.galaxyproject.org/package/darwin/i386/samtools/samtools-0.1.18-Darwin-i386.tgz</action> |
| 22 <action type="move_directory_files"> | 22 <action type="move_directory_files"> |
| 23 <source_directory>.</source_directory> | 23 <source_directory>.</source_directory> |
| 24 <destination_directory>$INSTALL_DIR</destination_directory> | 24 <destination_directory>$INSTALL_DIR</destination_directory> |
| 25 </action> | 25 </action> |
| 26 </actions> | 26 </actions> |
| 27 <actions os="darwin" architecture="x86_64"> | 27 <actions os="darwin" architecture="x86_64"> |
| 28 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/samtools/samtools-0.1.18-Darwin-x86_64.tgz</action> | 28 <action type="download_by_url" target_filename="samtools-0.1.18.tgz">http://depot.galaxyproject.org/package/darwin/x86_64/samtools/samtools-0.1.18-Darwin-x86_64.tgz</action> |
| 29 <action type="move_directory_files"> | 29 <action type="move_directory_files"> |
| 30 <source_directory>.</source_directory> | 30 <source_directory>.</source_directory> |
| 31 <destination_directory>$INSTALL_DIR</destination_directory> | 31 <destination_directory>$INSTALL_DIR</destination_directory> |
| 32 </action> | 32 </action> |
| 33 </actions> | 33 </actions> |
| 41 </action> | 41 </action> |
| 42 <action type="move_file"> | 42 <action type="move_file"> |
| 43 <source>libbam.a</source> | 43 <source>libbam.a</source> |
| 44 <destination>$INSTALL_DIR/lib</destination> | 44 <destination>$INSTALL_DIR/lib</destination> |
| 45 </action> | 45 </action> |
| 46 <action type="move_directory_files"> | |
| 47 <source_directory>src</source_directory> | |
| 48 <destination_directory>$INSTALL_DIR/include/bam</destination_directory> | |
| 49 </action> | |
| 46 </actions> | 50 </actions> |
| 47 <action type="set_environment"> | 51 <action type="set_environment"> |
| 48 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 52 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 49 <environment_variable name="BAM_LIB_PATH" action="set_to">$INSTALL_DIR/lib</environment_variable> | 53 <environment_variable name="BAM_LIB_PATH" action="set_to">$INSTALL_DIR/lib</environment_variable> |
| 54 <environment_variable name="BAM_ROOT" action="set_to">$INSTALL_DIR</environment_variable> | |
| 50 </action> | 55 </action> |
| 51 </actions_group> | 56 </actions_group> |
| 52 </install> | 57 </install> |
| 53 <readme> | 58 <readme> |
| 54 Program: samtools (Tools for alignments in the SAM format) | 59 Program: samtools (Tools for alignments in the SAM format) |