# HG changeset patch
# User devteam
# Date 1380053939 14400
# Node ID cac9b701b6f8cf4507a7fdf7d914675f899a14f7
# Parent  72432392e81abbefadf05548ee28caeee22ef672
Uploaded tool_dependencies.xml that defines a recipe to get a pre-compiled version if possible.

diff -r 72432392e81a -r cac9b701b6f8 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Feb 05 12:39:46 2013 -0500
+++ b/tool_dependencies.xml	Tue Sep 24 16:18:59 2013 -0400
@@ -2,18 +2,53 @@
 <tool_dependency>
     <package name="samtools" version="0.1.16">
         <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://downloads.sourceforge.net/project/samtools/samtools/0.1.16/samtools-0.1.16.tar.bz2</action>
-                <action type="shell_command">sed -i.bak 's/-lcurses/-lncurses/' Makefile</action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>samtools</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
+            <actions_group>
+                <actions os="linux" architecture="i386">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/samtools/samtools-0.1.16-linux-i386.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <actions os="linux" architecture="x86_64">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/samtools/samtools-0.1.16-linux-x86_64.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <actions os="darwin" architecture="i386">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/i386/samtools/samtools-0.1.16-Darwin-i386.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <actions os="darwin" architecture="x86_64">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/samtools/samtools-0.1.16-Darwin-x86_64.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <actions>
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/source/samtools/samtools-0.1.16.tar.bz2</action>
+                    <action type="shell_command">sed -i.bak 's/-lcurses/-lncurses/' Makefile</action>
+                    <action type="shell_command">make</action>
+                    <action type="move_file">
+                        <source>samtools</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>libbam.a</source>
+                        <destination>$INSTALL_DIR/lib</destination>
+                    </action>
+                </actions>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="BAM_LIB_PATH" action="set_to">$INSTALL_DIR/lib</environment_variable>
                 </action>
-            </actions>
+            </actions_group>
         </install>
         <readme>
 This is the last version of SAMTools to include the 'pileup' command.