Mercurial > repos > devteam > package_rpy_1_0_3

changeset 1:3e11ba53f2a6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_rpy_1_0_3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 18:46:37 -0500
parents c0eb80864491
children
files tool_dependencies.xml
diffstat 1 files changed, 13 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Apr 01 09:11:35 2014 -0400
+++ b/tool_dependencies.xml	Fri Dec 18 18:46:37 2015 -0500
@@ -1,28 +1,31 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="R" version="2.11.0">
-      <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="f9289486f06d" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="R" version="2.11.0">
+        <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="rpy" version="1.0.3">
-      <install version="1.0">
-          <actions>
-              <!--
-                Need to download from depot.galaxyproject.org, because the distributed version of rpy 1.0.3 
+        <install version="1.0">
+            <actions>
+                <!--
+                Need to download from depot.galaxyproject.org, because the distributed version of rpy 1.0.3
                 doesn't recognize R 2.11.0 as a valid version.
                 -->
                 <action type="download_by_url">http://depot.galaxyproject.org/package/source/rpy-1.0.3.tar.gz</action>
                 <action type="set_environment_for_install">
-                  <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                      <package name="R" version="2.11.0" />
+                    <repository changeset_revision="497dd02b0fe2" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="R" version="2.11.0" />
                     </repository>
                 </action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="shell_command">
-                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                     python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                 </action>
                 <action type="set_environment">
-                  <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="set_to" name="PYTHONPATH_RPY">$INSTALL_DIR/lib/python</environment_variable>
                     <environment_variable action="set_to" name="PATH_RPY">$INSTALL_DIR/bin</environment_variable>