comparison tool_dependencies.xml @ 0:c0eb80864491 draft

Imported from capsule None
author devteam
date Tue, 01 Apr 2014 09:11:35 -0400
parents
children 3e11ba53f2a6
comparison
equal deleted inserted replaced
-1:000000000000 0:c0eb80864491
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="2.11.0">
4 <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="rpy" version="1.0.3">
7 <install version="1.0">
8 <actions>
9 <!--
10 Need to download from depot.galaxyproject.org, because the distributed version of rpy 1.0.3
11 doesn't recognize R 2.11.0 as a valid version.
12 -->
13 <action type="download_by_url">http://depot.galaxyproject.org/package/source/rpy-1.0.3.tar.gz</action>
14 <action type="set_environment_for_install">
15 <repository changeset_revision="2c0a13200a73" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
16 <package name="R" version="2.11.0" />
17 </repository>
18 </action>
19 <action type="make_directory">$INSTALL_DIR/lib/python</action>
20 <action type="shell_command">
21 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
22 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
23 </action>
24 <action type="set_environment">
25 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
27 <environment_variable action="set_to" name="PYTHONPATH_RPY">$INSTALL_DIR/lib/python</environment_variable>
28 <environment_variable action="set_to" name="PATH_RPY">$INSTALL_DIR/bin</environment_variable>
29 </action>
30 </actions>
31 </install>
32 <readme />
33 </package>
34 </tool_dependency>