Mercurial > repos > devteam > package_freebayes_0_9_18_0059bdf

changeset 0:0873b583229a draft

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Uploaded
author devteam
date Thu, 11 Dec 2014 15:27:21 -0500
parents
children bc74bfbef072
files tool_dependencies.xml
diffstat 1 files changed, 28 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Dec 11 15:27:21 2014 -0500
@@ -0,0 +1,28 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="freebayes" version="freebayes-0.9.18_0059bdf">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/freebayes/freebayes-0.9.18_0059bdf.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>       
+                </actions>                
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+	  Starting from version freebayes-0.9.14 freebayes is distributed through ToolShed only as pre-compiled x86_64 linux binaries.
+	  This tarball contains two binaries:
+	  
+	  bamleftalign
+	  freebayes
+	  
+	  Corresponding freebayes release 0.9.18 (0059bdf)
+        </readme>
+    </package>
+</tool_dependency>
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