Mercurial > repos > devteam > package_fastx_toolkit_0_0_13

diff tool_dependencies.xml @ 0:aea9287960ef draft

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author devteam
date Tue, 20 Aug 2013 10:01:46 -0400
parents
children 1cd326991d32
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Aug 20 10:01:46 2013 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="libgtextutils" version="0.6">
+        <repository name="package_libgtextutils_0_6" owner="devteam" prior_installation_required="True" />
+    </package>
+    <package name="fastx_toolkit" version="0.0.13">
+            <actions>
+                <action type="download_by_url">http://hannonlab.cshl.edu/fastx_toolkit/fastx_toolkit-0.0.13.tar.bz2</action>
+                <action type="set_environment_for_install">
+                    <repository name="package_libgtextutils_0_6" owner="devteam" prior_installation_required="True">
+                        <package name="libgtextutils" version="0.6" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
+                <action type="shell_command">make &amp;&amp; make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>