# HG changeset patch
# User devteam
# Date 1386692898 18000
# Node ID 27b61d58dfb4287b18090ac6d3c85571ce9cf9d5
# Parent  64b58c8f282788fe34c1d1cf8add341c79c60133
Uploaded tool dependency definition that attempts to download a platform-specific precompiled binary.

diff -r 64b58c8f2827 -r 27b61d58dfb4 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Dec 04 13:55:59 2013 -0500
+++ b/tool_dependencies.xml	Tue Dec 10 11:28:18 2013 -0500
@@ -1,47 +1,62 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="libx11" version="1.5.0">
-      <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="libxproto" version="7.0.23">
-      <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="libxcb" version="1.9.1">
-      <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
     <package name="emboss" version="5.0.0">
-      <install version="1.0">
-          <actions>
-              <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
-                <action type="set_environment_for_install">
-                  <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                      <package name="libx11" version="1.5.0" />
-                  </repository>
-                    <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                        <package name="libxproto" version="7.0.23" />
-                    </repository>
-                    <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                        <package name="libxcb" version="1.9.1" />
-                    </repository>
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="i386" os="linux">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/emboss/emboss-5.0.0-Linux-i686.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>       
+                </actions>                
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/emboss/emboss-5.0.0-Linux-x86_64.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>       
+                </actions>                
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/emboss/emboss-5.0.0-Darwin-x86_64.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>       
+                </actions>                
+                <actions>
+                    <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
+                    <action type="set_environment_for_install">
+                        <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="libx11" version="1.5.0" />
+                        </repository>
+                        <repository changeset_revision="fd9ca3b78488" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="libxproto" version="7.0.23" />
+                        </repository>
+                        <repository changeset_revision="30193f711b44" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                            <package name="libxcb" version="1.9.1" />
+                        </repository>
+                    </action>
+                    <action type="shell_command">
+                        export LDFLAGS="-L$XCB_LIBS -lm"
+                        export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
+                    </action>
+                    <action type="shell_command">make &amp;&amp; make install</action>
+                    <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
+                    <action type="change_directory">PHYLIP-3.6b</action>
+                    <action type="shell_command">
+                        export LDFLAGS="-L$XCB_LIBS -lm"
+                        export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
+                    </action>
+                    <action type="shell_command">make &amp;&amp; make install</action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="EMBOSS_ACDROOT">$INSTALL_DIR/share/EMBOSS/acd</environment_variable>
+                    <environment_variable action="set_to" name="EMBOSS_DATA">$INSTALL_DIR/share/EMBOSS/data</environment_variable>
+                    <environment_variable action="set_to" name="PLPLOT_LIB">$INSTALL_DIR/share/EMBOSS</environment_variable>
                 </action>
-                <action type="shell_command">
-                    export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
-                    export LDFLAGS="-L$XCB_LIBS" &amp;&amp; \
-                    ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
-                </action>
-                <action type="shell_command">make &amp;&amp; make install</action>
-                <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
-                <action type="change_directory">PHYLIP-3.6b</action>
-                <action type="shell_command">
-                    export CFLAGS="-I$XPROTO_INCLUDES" &amp;&amp; \
-                    export LDFLAGS="-L$XCB_LIBS" &amp;&amp; \
-                    ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR
-                </action>
-                <action type="shell_command">make &amp;&amp; make install</action>
-                <action type="set_environment">
-                  <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
+            </actions_group>
         </install>
         <readme>
 These links provide information for building the Emboss package in most environments.