Mercurial > repos > devteam > package_emboss_5_0_0
comparison tool_dependencies.xml @ 0:9fd501d0f295 draft
Uploaded tool dependency definition that downloads and installs EMBOSS 5.0.0 and PHYLIP 3.6b.
| author | devteam |
|---|---|
| date | Thu, 20 Jun 2013 15:18:09 -0400 |
| parents | |
| children | f117a9d9dc9c |
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| -1:000000000000 | 0:9fd501d0f295 |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="libx11" version="1.5.0"> | |
| 4 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="emboss" version="5.0.0"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action> | |
| 10 <action type="set_environment_for_install"> | |
| 11 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 12 <package name="libx11" version="1.5.0" /> | |
| 13 </repository> | |
| 14 </action> | |
| 15 <action type="shell_command"> | |
| 16 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then | |
| 17 ./configure --prefix=$INSTALL_DIR | |
| 18 else | |
| 19 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR | |
| 20 fi | |
| 21 </action> | |
| 22 <action type="shell_command">make</action> | |
| 23 <action type="shell_command">make install</action> | |
| 24 </actions> | |
| 25 <actions> | |
| 26 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> | |
| 27 <action type="set_environment_for_install"> | |
| 28 <repository changeset_revision="90c1cbb8095a" name="package_x11_client_1_5_proto_7_0" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 29 <package name="libx11" version="1.5.0" /> | |
| 30 </repository> | |
| 31 </action> | |
| 32 <action type="shell_command"> | |
| 33 if [ -z $X11_LIB_DIR ] || [ -z $X11_INCLUDE_DIR ]; then | |
| 34 ./configure --prefix=$INSTALL_DIR | |
| 35 else | |
| 36 ./configure --prefix=$INSTALL_DIR --x-includes=$X11_INCLUDE_DIR --x-libraries=$X11_LIB_DIR CFLAGS='-I$INSTALL_DIR/include' | |
| 37 fi | |
| 38 </action> | |
| 39 <action type="shell_command">make</action> | |
| 40 <action type="shell_command">make install</action> | |
| 41 </actions> | |
| 42 </install> | |
| 43 <readme> | |
| 44 These links provide information for building the Emboss package in most environments. | |
| 45 | |
| 46 System requirements | |
| 47 http://emboss.sourceforge.net/download/#Requirements | |
| 48 | |
| 49 Platform-dependent notes | |
| 50 http://emboss.sourceforge.net/download/#Platforms | |
| 51 </readme> | |
| 52 </package> | |
| 53 </tool_dependency> |