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changeset 25:cc9baedbc059 draft

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planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 038641dc56c4f5880eedf536ba8313786c71dc0b-dirty
author peterjc
date Fri, 15 Sep 2017 10:44:01 -0400
parents 3b4efe26da79
children 2faf54c2e151
files tools/ncbi_blast_plus/ncbi_macros.xml
diffstat 1 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tools/ncbi_blast_plus/ncbi_macros.xml	Fri Sep 15 10:02:56 2017 -0400
+++ b/tools/ncbi_blast_plus/ncbi_macros.xml	Fri Sep 15 10:44:01 2017 -0400
@@ -188,7 +188,7 @@
             <when value="file">
                 <param name="database" type="hidden" value="" />
                 <param name="histdb" type="hidden" value="" />
-                <param argument="subject" type="data" format="fasta" label="Nucleotide FASTA subject file to use instead of a database"/>
+                <param argument="-subject" type="data" format="fasta" label="Nucleotide FASTA subject file to use instead of a database"/>
             </when>
         </conditional>
     </xml>
@@ -200,7 +200,7 @@
               <option value="file">FASTA file from your history (see warning note below)</option>
             </param>
             <when value="db">
-                <param name="database" argument="db" type="select" multiple="true" label="Protein BLAST database">
+                <param name="database" argument="-db" type="select" multiple="true" label="Protein BLAST database">
                     <options from_data_table="blastdb_p" />
                 </param>
                 <param name="histdb" type="hidden" value="" />
@@ -208,13 +208,13 @@
             </when>
             <when value="histdb">
                 <param name="database" type="hidden" value="" />
-                <param name="histdb" argument="db" type="data" format="blastdbp" label="Protein BLAST database" />
+                <param name="histdb" argument="-db" type="data" format="blastdbp" label="Protein BLAST database" />
                 <param name="subject" type="hidden" value="" />
             </when>
             <when value="file">
                 <param name="database" type="hidden" value="" />
                 <param name="histdb" type="hidden" value="" />
-                <param argument="subject" type="data" format="fasta" label="Protein FASTA subject file to use instead of a database"/>
+                <param argument="-subject" type="data" format="fasta" label="Protein FASTA subject file to use instead of a database"/>
             </when>
         </conditional>
     </xml>
@@ -225,7 +225,7 @@
               <option value="histdb">BLAST protein domain database from your history</option>
             </param>
             <when value="db">
-                <param name="database" type="select" label="Protein domain database">
+                <param name="database" argument="-db" type="select" label="Protein domain database">
                     <options from_data_table="blastdb_d" />
                 </param>
                 <param name="histdb" type="hidden" value="" />
@@ -233,7 +233,7 @@
             </when>
             <when value="histdb">
                 <param name="database" type="hidden" value="" />
-                <param name="histdb" type="data" format="blastdbd" label="Protein domain database" />
+                <param name="histdb" argument="-db" type="data" format="blastdbd" label="Protein domain database" />
                 <param name="subject" type="hidden" value="" />
             </when>
         </conditional>
@@ -245,12 +245,12 @@
               <option value="prot">Protein</option>
             </param>
             <when value="nucl">
-                <param name="database" type="select" multiple="true" label="Nucleotide BLAST database">
+                <param name="database" argument="-db" type="select" multiple="true" label="Nucleotide BLAST database">
                     <options from_data_table="blastdb" />
                 </param>
             </when>
             <when value="prot">
-                <param name="database" type="select" multiple="true" label="Protein BLAST database">
+                <param name="database" argument="-db" type="select" multiple="true" label="Protein BLAST database">
                     <options from_data_table="blastdb_p" />
                 </param>
             </when>