# HG changeset patch
# User peterjc
# Date 1509378557 14400
# Node ID d724d9af93eefa626f975a5fea6bfa815d14d87d
# Parent  82e833f023321bd966419f6b1c4a34f0e018abc7
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 6c7e52483c5cf5e6cd366e7551a525bd0dc9acad-dirty

diff -r 82e833f02332 -r d724d9af93ee tools/ncbi_blast_plus/ncbi_macros.xml
--- a/tools/ncbi_blast_plus/ncbi_macros.xml	Wed Oct 11 07:43:09 2017 -0400
+++ b/tools/ncbi_blast_plus/ncbi_macros.xml	Mon Oct 30 11:49:17 2017 -0400
@@ -755,8 +755,14 @@
 
     <token name="@CLI_OPTIONS@">**Advanced Options**
 
-For help with advanced options and their default values, visit the `NCBI BLAST® Command Line Applications User Manual &lt;https://www.ncbi.nlm.nih.gov/books/NBK279675/&gt;`_.
-For amino acid substitution matrices, the NCBI User Manual page is `here &lt;https://www.ncbi.nlm.nih.gov/books/NBK379667/&gt;`_.
+For help with advanced options and their default values, visit the
+NCBI BLAST® Command Line Applications User Manual, Appendices,
+`Options for the command-line applications
+&lt;https://www.ncbi.nlm.nih.gov/books/NBK279684/#_appendices_Options_for_the_commandline_a_&gt;`_.
+
+For amino acid substitution matrices, see `BLAST Substitution Matrices
+&lt;https://www.ncbi.nlm.nih.gov/books/NBK279684/#_appendices_BLAST_Substitution_Matrices_&gt;`_ in the same
+appendices.
 
     </token>
 </macros>