# HG changeset patch
# User peterjc
# Date 1528213330 14400
# Node ID 360352490a06dca849a0526fe2e8ceb9d4054f74
# Parent  13aa389f4eebb534728bb1e3449cbf9ff93a48c1
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 1b9ec80b23b7fc9d3ed95afba3bc3b57dc3f47c2-dirty

diff -r 13aa389f4eeb -r 360352490a06 tools/ncbi_blast_plus/README.rst
--- a/tools/ncbi_blast_plus/README.rst	Mon May 28 07:57:56 2018 -0400
+++ b/tools/ncbi_blast_plus/README.rst	Tue Jun 05 11:42:10 2018 -0400
@@ -31,13 +31,13 @@
 
 NCBI BLAST+ integrated into Galaxy.
 P.J.A. Cock, J.M. Chilton, B. Gruening, J.E. Johnson, N. Soranzo
-GigaScience, 2015, 4:39 http://dx.doi.org/10.1186/s13742-015-0080-7
+GigaScience, 2015, 4:39 https://doi.org/10.1186/s13742-015-0080-7
 
 You should also cite the NCBI BLAST+ tools:
 
 BLAST+: architecture and applications.
 C. Camacho et al. BMC Bioinformatics 2009, 10:421.
-DOI: http://dx.doi.org/10.1186/1471-2105-10-421
+https://doi.org/10.1186/1471-2105-10-421
 
 
 Automated Installation
diff -r 13aa389f4eeb -r 360352490a06 tools/ncbi_blast_plus/blastxml_to_tabular.xml
--- a/tools/ncbi_blast_plus/blastxml_to_tabular.xml	Mon May 28 07:57:56 2018 -0400
+++ b/tools/ncbi_blast_plus/blastxml_to_tabular.xml	Tue Jun 05 11:42:10 2018 -0400
@@ -200,7 +200,7 @@
 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
 Galaxy tools and workflows for sequence analysis with applications
 in molecular plant pathology. PeerJ 1:e167
-http://dx.doi.org/10.7717/peerj.167
+https://doi.org/10.7717/peerj.167
 
 This wrapper is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
diff -r 13aa389f4eeb -r 360352490a06 tools/ncbi_blast_plus/ncbi_macros.xml
--- a/tools/ncbi_blast_plus/ncbi_macros.xml	Mon May 28 07:57:56 2018 -0400
+++ b/tools/ncbi_blast_plus/ncbi_macros.xml	Tue Jun 05 11:42:10 2018 -0400
@@ -654,12 +654,12 @@
     <token name="@REFERENCES@">
 Peter J. A. Cock, John M. Chilton, Björn Grüning, James E. Johnson, Nicola Soranzo (2015).
 NCBI BLAST+ integrated into Galaxy. *GigaScience* 4:39
-http://dx.doi.org/10.1186/s13742-015-0080-7
+https://doi.org/10.1186/s13742-015-0080-7
 
 Christiam Camacho et al. (2009).
 BLAST+: architecture and applications.
 *BMC Bioinformatics* 15;10:421.
-http://dx.doi.org/10.1186/1471-2105-10-421
+https://doi.org/10.1186/1471-2105-10-421
 
 This wrapper is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
diff -r 13aa389f4eeb -r 360352490a06 tools/ncbi_blast_plus/repository_dependencies.xml
--- a/tools/ncbi_blast_plus/repository_dependencies.xml	Mon May 28 07:57:56 2018 -0400
+++ b/tools/ncbi_blast_plus/repository_dependencies.xml	Tue Jun 05 11:42:10 2018 -0400
@@ -1,4 +1,4 @@
 <?xml version="1.0"?>
 <repositories description="This requires the BLAST datatype definitions (e.g. the BLAST XML format).">
-    <repository changeset_revision="310ec0f47485" name="blast_datatypes" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="63befb860c3e" name="blast_datatypes" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
 </repositories>