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comparison test-data/tblastn_four_human_vs_rhodopsin.html @ 13:4dcc9429d6d2 draft

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v0.2.00, updated to depend on BLAST+ 2.5.0
author peterjc
date Mon, 05 Dec 2016 13:58:24 -0500
parents 0e86300e49c0
children 13aa389f4eeb
comparison
equal deleted inserted replaced
12:d8f2c1f560ec 13:4dcc9429d6d2
1 <HTML> 1 <HTML>
2 <TITLE>BLAST Search Results</TITLE> 2 <TITLE>BLAST Search Results</TITLE>
3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
4 <PRE> 4 <PRE>
5 5
6 <b>TBLASTN 2.2.31+</b> 6 <b>TBLASTN 2.5.0+</b>
7
8
9 <b><a
10 href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=R
11 etrieve&list_uids=9254694&dopt=Citation">Reference</a>:</b>
12 Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer,
13 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
14 "Gapped BLAST and PSI-BLAST: a new generation of protein database
15 search programs", Nucleic Acids Res. 25:3389-3402.
16
17
18
19 Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
20 6 sequences; 10,296 total letters
21
7 22
8 23
9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 24 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 25 OS=Homo sapiens GN=ERP44 PE=1 SV=1
11 26
12 Length=406 27 Length=406
13
14 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
15
16 Length=1047
17 28
18 29
19 ***** No hits found ***** 30 ***** No hits found *****
20 31
21 32
25 36
26 Gapped 37 Gapped
27 Lambda K H a alpha sigma 38 Lambda K H a alpha sigma
28 0.299 0.0710 0.270 1.10 13.8 14.5 39 0.299 0.0710 0.270 1.10 13.8 14.5
29 40
30 Effective search space used: 127710 41 Effective search space used: 1239330
31 42
32 43
33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 44 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
34 OS=Homo sapiens GN=ERP44 PE=1 SV=1 45 GN=BMP2K PE=1 SV=2
35 46
36 Length=406 47 Length=1161
37
38 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
39 cds
40
41 Length=1574
42 48
43 49
44 ***** No hits found ***** 50 ***** No hits found *****
45 51
46 52
47 53
48 Lambda K H a alpha 54 Lambda K H a alpha
49 0.347 0.182 0.684 0.522 1.92 55 0.334 0.170 0.615 0.522 1.92
50 56
51 Gapped 57 Gapped
52 Lambda K H a alpha sigma 58 Lambda K H a alpha sigma
53 0.299 0.0710 0.270 1.10 13.8 14.5 59 0.299 0.0710 0.270 1.10 13.8 14.5
54 60
55 Effective search space used: 127710 61 Effective search space used: 3667980
56 62
57 63
58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 64 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
59 OS=Homo sapiens GN=ERP44 PE=1 SV=1 65 SV=4
60 66
61 Length=406 67 Length=1382
62
63 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
64 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
65
66 Length=4301
67 68
68 69
69 ***** No hits found ***** 70 ***** No hits found *****
70 71
71 72
72 73
73 Lambda K H a alpha 74 Lambda K H a alpha
74 0.347 0.182 0.684 0.522 1.92 75 0.346 0.180 0.700 0.522 1.92
75 76
76 Gapped 77 Gapped
77 Lambda K H a alpha sigma 78 Lambda K H a alpha sigma
78 0.299 0.0710 0.270 1.10 13.8 14.5 79 0.299 0.0710 0.270 1.10 13.8 14.5
79 80
80 Effective search space used: 127710 81 Effective search space used: 4374000
81 82
82 83
83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 84 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
84 OS=Homo sapiens GN=ERP44 PE=1 SV=1 85
85 86 Length=348
86 Length=406 87 Score E
87 88 Sequences producing significant alignments: (Bits) Value
88 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin 89
90 gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA <a href=#Subject_1>732</a> 0.0
91 gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene... <a href=#Subject_5>711</a> 0.0
92 gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodo... <a href=#Subject_4>658</a> 0.0
93 gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, compl... <a href=#Subject_2>646</a> 0.0
94 gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fres... <a href=#Subject_6>626</a> 0.0
95 gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020... <a href=#Subject_3>151</a> 1e-71
96
97
98 ><a name=Subject_1></a> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO),
99 mRNA
100 Length=1047
101
102 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
103 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
104 Frame = +1
105
106 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
107 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
108 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180
109
110 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
111 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
112 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
113
114 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
115 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
116 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
117
118 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
119 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
120 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720
121
122 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
123 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
124 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900
125
126 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
127 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
128 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
129
130
131 ><a name=Subject_5></a> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene
132 for rhodopsin, complete cds
133 Length=1047
134
135 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
136 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
137 Frame = +1
138
139 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
140 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
141 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
142
143 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
144 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
145 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
146
147 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
148 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
149 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
150
151 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
152 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
153 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720
154
155 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
156 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
157 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900
158
159 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
160 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
161 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
162
163
164 ><a name=Subject_4></a> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
89 (RHO) mRNA, partial cds 165 (RHO) mRNA, partial cds
90
91 Length=983 166 Length=983
92 167
93 168 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
94 ***** No hits found ***** 169 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
170 Frame = +1
171
172 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
173 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
174 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
175
176 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130
177 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
178 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360
179
180 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190
181 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
182 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540
183
184 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250
185 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
186 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720
187
188 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310
189 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
190 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900
191
192 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336
193 KQFRNCMLTT+CCGKNPLGDDEAS T
194 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
195
196
197 ><a name=Subject_2></a> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
198 cds
199 Length=1574
200
201 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
202 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
203 Frame = +3
204
205 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
206 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
207 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221
208
209 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
210 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
211 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401
212
213 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
214 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
215 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581
216
217 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
218 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
219 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761
220
221 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
222 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
223 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941
224
225 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341
226 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
227 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
228
229
230 ><a name=Subject_6></a> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
231 water form rod opsin, complete cds
232 Length=1344
233
234 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
235 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
236 Frame = +2
237
238 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
239 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
240 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202
241
242 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
243 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
244 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382
245
246 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
247 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP
248 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562
249
250 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
251 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES
252 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742
253
254 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
255 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
256 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922
257
258 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341
259 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
260 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
261
262
263 ><a name=Subject_3></a> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
264 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
265 Length=4301
266
267 Score = 151 bits (342), Expect(2) = 1e-71, Method: Compositional matrix adjust.
268 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
269 Frame = +3
270
271 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
272 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
273 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
274
275 Query 299 AIYNPVIYIMMNKQ 312
276 +IYNPVIYIMMNKQ
277 Sbjct 3327 SIYNPVIYIMMNKQ 3368
278
279
280 Score = 126 bits (284), Expect(2) = 1e-71, Method: Compositional matrix adjust.
281 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
282 Frame = +2
283
284 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
285 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
286 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
287
288
289 Score = 229 bits (523), Expect = 3e-67, Method: Compositional matrix adjust.
290 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
291 Frame = +1
292
293 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
294 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
295 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
296
297 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
298 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
299 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
300
301
302 Score = 122 bits (276), Expect = 2e-32, Method: Compositional matrix adjust.
303 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
304 Frame = +3
305
306 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
307 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
308 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
309
310
311 Score = 57.7 bits (125), Expect = 4e-12, Method: Compositional matrix adjust.
312 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
313 Frame = +1
314
315 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
316 QFRNCMLTT+CCGKNPLGDDEAS T
317 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
95 318
96 319
97 320
98 Lambda K H a alpha 321 Lambda K H a alpha
99 0.347 0.182 0.684 0.522 1.92 322 0.351 0.182 0.707 0.522 1.92
100 323
101 Gapped 324 Gapped
102 Lambda K H a alpha sigma 325 Lambda K H a alpha sigma
103 0.299 0.0710 0.270 1.10 13.8 14.5 326 0.299 0.0710 0.270 1.10 13.8 14.5
104 327
105 Effective search space used: 127710 328 Effective search space used: 1049670
106 329
107 330
108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 331 Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
109 OS=Homo sapiens GN=ERP44 PE=1 SV=1 332 Posted date: Unknown
110 333 Number of letters in database: 10,296
111 Length=406 334 Number of sequences in database: 6
112
113 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
114 rhodopsin, complete cds
115
116 Length=1047
117
118
119 ***** No hits found *****
120
121
122
123 Lambda K H a alpha
124 0.347 0.182 0.684 0.522 1.92
125
126 Gapped
127 Lambda K H a alpha sigma
128 0.299 0.0710 0.270 1.10 13.8 14.5
129
130 Effective search space used: 127710
131
132
133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
134 OS=Homo sapiens GN=ERP44 PE=1 SV=1
135
136 Length=406
137
138 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
139 water form rod opsin, complete cds
140
141 Length=1344
142
143
144 ***** No hits found *****
145
146
147
148 Lambda K H a alpha
149 0.347 0.182 0.684 0.522 1.92
150
151 Gapped
152 Lambda K H a alpha sigma
153 0.299 0.0710 0.270 1.10 13.8 14.5
154
155 Effective search space used: 127710
156
157
158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
159 GN=BMP2K PE=1 SV=2
160
161 Length=1161
162
163 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
164
165 Length=1047
166
167
168 ***** No hits found *****
169
170
171
172 Lambda K H a alpha
173 0.334 0.170 0.615 0.522 1.92
174
175 Gapped
176 Lambda K H a alpha sigma
177 0.299 0.0710 0.270 1.10 13.8 14.5
178
179 Effective search space used: 370988
180
181
182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
183 GN=BMP2K PE=1 SV=2
184
185 Length=1161
186
187 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
188 cds
189
190 Length=1574
191
192
193 ***** No hits found *****
194
195
196
197 Lambda K H a alpha
198 0.334 0.170 0.615 0.522 1.92
199
200 Gapped
201 Lambda K H a alpha sigma
202 0.299 0.0710 0.270 1.10 13.8 14.5
203
204 Effective search space used: 370988
205
206
207 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
208 GN=BMP2K PE=1 SV=2
209
210 Length=1161
211
212 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
213 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
214
215 Length=4301
216
217
218 ***** No hits found *****
219
220
221
222 Lambda K H a alpha
223 0.334 0.170 0.615 0.522 1.92
224
225 Gapped
226 Lambda K H a alpha sigma
227 0.299 0.0710 0.270 1.10 13.8 14.5
228
229 Effective search space used: 370988
230
231
232 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
233 GN=BMP2K PE=1 SV=2
234
235 Length=1161
236
237 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
238 (RHO) mRNA, partial cds
239
240 Length=983
241
242
243 ***** No hits found *****
244
245
246
247 Lambda K H a alpha
248 0.334 0.170 0.615 0.522 1.92
249
250 Gapped
251 Lambda K H a alpha sigma
252 0.299 0.0710 0.270 1.10 13.8 14.5
253
254 Effective search space used: 370988
255
256
257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
258 GN=BMP2K PE=1 SV=2
259
260 Length=1161
261
262 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
263 rhodopsin, complete cds
264
265 Length=1047
266
267
268 ***** No hits found *****
269
270
271
272 Lambda K H a alpha
273 0.334 0.170 0.615 0.522 1.92
274
275 Gapped
276 Lambda K H a alpha sigma
277 0.299 0.0710 0.270 1.10 13.8 14.5
278
279 Effective search space used: 370988
280
281
282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
283 GN=BMP2K PE=1 SV=2
284
285 Length=1161
286
287 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
288 water form rod opsin, complete cds
289
290 Length=1344
291
292
293 ***** No hits found *****
294
295
296
297 Lambda K H a alpha
298 0.334 0.170 0.615 0.522 1.92
299
300 Gapped
301 Lambda K H a alpha sigma
302 0.299 0.0710 0.270 1.10 13.8 14.5
303
304 Effective search space used: 370988
305
306
307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
308 SV=4
309
310 Length=1382
311
312 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
313
314 Length=1047
315
316
317 ***** No hits found *****
318
319
320
321 Lambda K H a alpha
322 0.346 0.180 0.700 0.522 1.92
323
324 Gapped
325 Lambda K H a alpha sigma
326 0.299 0.0710 0.270 1.10 13.8 14.5
327
328 Effective search space used: 441350
329
330
331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
332 SV=4
333
334 Length=1382
335
336 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
337 cds
338
339 Length=1574
340
341
342 ***** No hits found *****
343
344
345
346 Lambda K H a alpha
347 0.346 0.180 0.700 0.522 1.92
348
349 Gapped
350 Lambda K H a alpha sigma
351 0.299 0.0710 0.270 1.10 13.8 14.5
352
353 Effective search space used: 441350
354
355
356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
357 SV=4
358
359 Length=1382
360
361 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
362 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
363
364 Length=4301
365
366
367 ***** No hits found *****
368
369
370
371 Lambda K H a alpha
372 0.346 0.180 0.700 0.522 1.92
373
374 Gapped
375 Lambda K H a alpha sigma
376 0.299 0.0710 0.270 1.10 13.8 14.5
377
378 Effective search space used: 441350
379
380
381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
382 SV=4
383
384 Length=1382
385
386 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
387 (RHO) mRNA, partial cds
388
389 Length=983
390
391
392 ***** No hits found *****
393
394
395
396 Lambda K H a alpha
397 0.346 0.180 0.700 0.522 1.92
398
399 Gapped
400 Lambda K H a alpha sigma
401 0.299 0.0710 0.270 1.10 13.8 14.5
402
403 Effective search space used: 441350
404
405
406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
407 SV=4
408
409 Length=1382
410
411 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
412 rhodopsin, complete cds
413
414 Length=1047
415
416
417 ***** No hits found *****
418
419
420
421 Lambda K H a alpha
422 0.346 0.180 0.700 0.522 1.92
423
424 Gapped
425 Lambda K H a alpha sigma
426 0.299 0.0710 0.270 1.10 13.8 14.5
427
428 Effective search space used: 441350
429
430
431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
432 SV=4
433
434 Length=1382
435
436 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
437 water form rod opsin, complete cds
438
439 Length=1344
440
441
442 ***** No hits found *****
443
444
445
446 Lambda K H a alpha
447 0.346 0.180 0.700 0.522 1.92
448
449 Gapped
450 Lambda K H a alpha sigma
451 0.299 0.0710 0.270 1.10 13.8 14.5
452
453 Effective search space used: 441350
454
455
456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
457
458 Length=348
459
460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
461
462 Length=1047
463
464
465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
467 Frame = +1
468
469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
471 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180
472
473 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
474 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
475 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
476
477 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
478 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
479 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
480
481 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
482 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
483 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720
484
485 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
486 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
487 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900
488
489 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
492
493
494
495 Lambda K H a alpha
496 0.351 0.182 0.707 0.522 1.92
497
498 Gapped
499 Lambda K H a alpha sigma
500 0.299 0.0710 0.270 1.10 13.8 14.5
501
502 Effective search space used: 109230
503
504
505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
506
507 Length=348
508
509 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
510 cds
511
512 Length=1574
513
514
515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
517 Frame = +3
518
519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
521 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221
522
523 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
524 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
525 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401
526
527 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
528 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
529 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581
530
531 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
532 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
533 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761
534
535 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
536 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
537 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941
538
539 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341
540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
542
543
544
545 Lambda K H a alpha
546 0.351 0.182 0.707 0.522 1.92
547
548 Gapped
549 Lambda K H a alpha sigma
550 0.299 0.0710 0.270 1.10 13.8 14.5
551
552 Effective search space used: 109230
553
554
555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
556
557 Length=348
558
559 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
561
562 Length=4301
563
564
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust.
566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
567 Frame = +3
568
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
572
573 Query 299 AIYNPVIYIMMNKQ 312
574 +IYNPVIYIMMNKQ
575 Sbjct 3327 SIYNPVIYIMMNKQ 3368
576
577
578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust.
579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
580 Frame = +2
581
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
585
586
587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust.
588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
589 Frame = +1
590
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
594
595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
598
599
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust.
601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
602 Frame = +3
603
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
607
608
609 Score = 57.7 bits (125), Expect = 2e-12, Method: Compositional matrix adjust.
610 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
611 Frame = +1
612
613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
614 QFRNCMLTT+CCGKNPLGDDEAS T
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
616
617
618
619 Lambda K H a alpha
620 0.351 0.182 0.707 0.522 1.92
621
622 Gapped
623 Lambda K H a alpha sigma
624 0.299 0.0710 0.270 1.10 13.8 14.5
625
626 Effective search space used: 109230
627
628
629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
630
631 Length=348
632
633 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
634 (RHO) mRNA, partial cds
635
636 Length=983
637
638
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
641 Frame = +1
642
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
646
647 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130
648 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
649 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360
650
651 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190
652 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
653 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540
654
655 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250
656 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
657 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720
658
659 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310
660 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
661 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900
662
663 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336
664 KQFRNCMLTT+CCGKNPLGDDEAS T
665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
666
667
668
669 Lambda K H a alpha
670 0.351 0.182 0.707 0.522 1.92
671
672 Gapped
673 Lambda K H a alpha sigma
674 0.299 0.0710 0.270 1.10 13.8 14.5
675
676 Effective search space used: 109230
677
678
679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
680
681 Length=348
682
683 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
684 rhodopsin, complete cds
685
686 Length=1047
687
688
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
691 Frame = +1
692
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
696
697 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
698 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
699 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
700
701 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
702 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
703 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
704
705 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
706 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
707 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720
708
709 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
710 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
711 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900
712
713 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
716
717
718
719 Lambda K H a alpha
720 0.351 0.182 0.707 0.522 1.92
721
722 Gapped
723 Lambda K H a alpha sigma
724 0.299 0.0710 0.270 1.10 13.8 14.5
725
726 Effective search space used: 109230
727
728
729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
730
731 Length=348
732
733 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
734 water form rod opsin, complete cds
735
736 Length=1344
737
738
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
741 Frame = +2
742
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202
746
747 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
748 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
749 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382
750
751 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
752 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP
753 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562
754
755 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
756 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES
757 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742
758
759 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
760 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
761 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922
762
763 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341
764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
766
767
768
769 Lambda K H a alpha
770 0.351 0.182 0.707 0.522 1.92
771
772 Gapped
773 Lambda K H a alpha sigma
774 0.299 0.0710 0.270 1.10 13.8 14.5
775
776 Effective search space used: 109230
777
778 335
779 336
780 337
781 Matrix: BLOSUM80 338 Matrix: BLOSUM80
782 Gap Penalties: Existence: 10, Extension: 1 339 Gap Penalties: Existence: 10, Extension: 1