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comparison test-data/blastn_chimera_vs_three_human_max1.txt @ 8:0e86300e49c0 draft

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v0.1.06, now using BLAST+ 2.2.31
author peterjc
date Mon, 07 Sep 2015 04:43:09 -0400
parents 432ea9614cc9
children 4dcc9429d6d2
comparison
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7:b7aac4356727 8:0e86300e49c0
1 BLASTN 2.2.30+ 1 BLASTN 2.2.31+
2 2
3 3
4 Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb 4 Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
5 Miller (2000), "A greedy algorithm for aligning DNA sequences", J 5 Miller (2000), "A greedy algorithm for aligning DNA sequences", J
6 Comput Biol 2000; 7(1-2):203-14. 6 Comput Biol 2000; 7(1-2):203-14.
16 16
17 Length=9973 17 Length=9973
18 Score E 18 Score E
19 Sequences producing significant alignments: (Bits) Value 19 Sequences producing significant alignments: (Bits) Value
20 20
21 ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein,... 8421 0.0 21 ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein,... 8421 0.0
22 22
23 23
24 > ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, 24 > ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein,
25 partial cds. 25 partial cds.
26 Length=4796 26 Length=4796
27 27
28 Score = 8421 bits (4560), Expect = 0.0 28 Score = 8421 bits (4560), Expect = 0.0
29 Identities = 4560/4560 (100%), Gaps = 0/4560 (0%) 29 Identities = 4560/4560 (100%), Gaps = 0/4560 (0%)
30 Strand=Plus/Plus 30 Strand=Plus/Plus
31 31
32 Query 1 GGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTC 60 32 Query 1 GGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTC 60
33 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 33 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
344 344
345 Effective search space used: 106299490 345 Effective search space used: 106299490
346 346
347 347
348 Database: Just 3 human mRNA sequences 348 Database: Just 3 human mRNA sequences
349 Posted date: Dec 26, 2014 5:54 AM 349 Posted date: Jul 4, 2015 3:35 PM
350 Number of letters in database: 10,732 350 Number of letters in database: 10,732
351 Number of sequences in database: 3 351 Number of sequences in database: 3
352 352
353 353
354 354