Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/blastn_arabidopsis.xml @ 14:db9863278936 draft
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author | peterjc |
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date | Thu, 08 Dec 2016 06:31:03 -0500 |
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1 <?xml version="1.0"?> |
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
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3 <BlastOutput> |
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4 <BlastOutput_program>blastn</BlastOutput_program> |
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5 <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version> |
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6 <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference> |
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7 <BlastOutput_db>/mnt/galaxy/galaxy-central/database/files/000/dataset_857_files/blastdb</BlastOutput_db> |
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> |
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9 <BlastOutput_query-def>chunk_of_plant</BlastOutput_query-def> |
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10 <BlastOutput_query-len>630</BlastOutput_query-len> |
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11 <BlastOutput_param> |
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12 <Parameters> |
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13 <Parameters_expect>0.001</Parameters_expect> |
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14 <Parameters_sc-match>1</Parameters_sc-match> |
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15 <Parameters_sc-mismatch>-2</Parameters_sc-mismatch> |
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16 <Parameters_gap-open>0</Parameters_gap-open> |
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17 <Parameters_gap-extend>0</Parameters_gap-extend> |
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18 <Parameters_filter>L;m;</Parameters_filter> |
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19 </Parameters> |
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20 </BlastOutput_param> |
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21 <BlastOutput_iterations> |
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22 <Iteration> |
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23 <Iteration_iter-num>1</Iteration_iter-num> |
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24 <Iteration_query-ID>Query_1</Iteration_query-ID> |
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25 <Iteration_query-def>chunk_of_plant</Iteration_query-def> |
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26 <Iteration_query-len>630</Iteration_query-len> |
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27 <Iteration_hits> |
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28 <Hit> |
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29 <Hit_num>1</Hit_num> |
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30 <Hit_id>gnl|BL_ORD_ID|2</Hit_id> |
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31 <Hit_def>chrIII gi|240255695|ref|NC_003074.8| Arabidopsis thaliana chromosome 3, complete sequence</Hit_def> |
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32 <Hit_accession>2</Hit_accession> |
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33 <Hit_len>23459830</Hit_len> |
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34 <Hit_hsps> |
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35 <Hsp> |
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36 <Hsp_num>1</Hsp_num> |
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37 <Hsp_bit-score>1164.51</Hsp_bit-score> |
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38 <Hsp_score>630</Hsp_score> |
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39 <Hsp_evalue>0</Hsp_evalue> |
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40 <Hsp_query-from>1</Hsp_query-from> |
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41 <Hsp_query-to>630</Hsp_query-to> |
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42 <Hsp_hit-from>4341</Hsp_hit-from> |
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43 <Hsp_hit-to>4970</Hsp_hit-to> |
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44 <Hsp_query-frame>1</Hsp_query-frame> |
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45 <Hsp_hit-frame>1</Hsp_hit-frame> |
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46 <Hsp_identity>630</Hsp_identity> |
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47 <Hsp_positive>630</Hsp_positive> |
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48 <Hsp_gaps>0</Hsp_gaps> |
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49 <Hsp_align-len>630</Hsp_align-len> |
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50 <Hsp_qseq>GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT</Hsp_qseq> |
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51 <Hsp_hseq>GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT</Hsp_hseq> |
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52 <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline> |
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53 </Hsp> |
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54 </Hit_hsps> |
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55 </Hit> |
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56 </Iteration_hits> |
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57 <Iteration_stat> |
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58 <Statistics> |
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59 <Statistics_db-num>5</Statistics_db-num> |
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60 <Statistics_db-len>119146348</Statistics_db-len> |
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61 <Statistics_hsp-len>26</Statistics_hsp-len> |
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62 <Statistics_eff-space>71964315672</Statistics_eff-space> |
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63 <Statistics_kappa>0.46</Statistics_kappa> |
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64 <Statistics_lambda>1.28</Statistics_lambda> |
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65 <Statistics_entropy>0.85</Statistics_entropy> |
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66 </Statistics> |
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67 </Iteration_stat> |
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68 </Iteration> |
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69 </BlastOutput_iterations> |
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70 </BlastOutput> |
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71 |