Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/tblastn_four_human_vs_rhodopsin.html @ 37:996c3ef26f37 draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit e2ff355ba89947ac15596fa7cb4330fe5590f627-dirty
author | peterjc |
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date | Tue, 23 Oct 2018 08:38:16 -0400 |
parents | 13aa389f4eeb |
children | fa7f92b81db1 |
rev | line source |
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1 <HTML> |
31
13aa389f4eeb
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 16ef84e19ea373838bbfb921b9ef2cd4b02b8788-dirty
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2 <HEAD><TITLE>BLAST Search Results</TITLE></HEAD> |
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3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> |
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4 <PRE> |
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5 |
31
13aa389f4eeb
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 16ef84e19ea373838bbfb921b9ef2cd4b02b8788-dirty
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6 <b>TBLASTN 2.7.1+</b> |
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7 |
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8 |
13 | 9 <b><a |
10 href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=R | |
11 etrieve&list_uids=9254694&dopt=Citation">Reference</a>:</b> | |
12 Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, | |
13 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), | |
14 "Gapped BLAST and PSI-BLAST: a new generation of protein database | |
15 search programs", Nucleic Acids Res. 25:3389-3402. | |
0
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16 |
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17 |
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18 |
13 | 19 Database: User specified sequence set (Input: rhodopsin_nucs.fasta). |
20 6 sequences; 10,296 total letters | |
0
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21 |
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22 |
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23 |
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24 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 |
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25 OS=Homo sapiens GN=ERP44 PE=1 SV=1 |
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26 |
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27 Length=406 |
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28 |
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29 |
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30 ***** No hits found ***** |
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31 |
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32 |
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33 |
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34 Lambda K H a alpha |
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35 0.347 0.182 0.684 0.522 1.92 |
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36 |
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37 Gapped |
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38 Lambda K H a alpha sigma |
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39 0.299 0.0710 0.270 1.10 13.8 14.5 |
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40 |
13 | 41 Effective search space used: 1239330 |
0
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42 |
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43 |
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44 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens |
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45 GN=BMP2K PE=1 SV=2 |
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46 |
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47 Length=1161 |
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48 |
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49 |
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50 ***** No hits found ***** |
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51 |
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52 |
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53 |
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54 Lambda K H a alpha |
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55 0.334 0.170 0.615 0.522 1.92 |
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56 |
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57 Gapped |
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58 Lambda K H a alpha sigma |
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59 0.299 0.0710 0.270 1.10 13.8 14.5 |
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60 |
13 | 61 Effective search space used: 3667980 |
0
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62 |
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63 |
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64 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 |
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65 SV=4 |
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66 |
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67 Length=1382 |
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68 |
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69 |
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70 ***** No hits found ***** |
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71 |
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72 |
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73 |
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74 Lambda K H a alpha |
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75 0.346 0.180 0.700 0.522 1.92 |
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76 |
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77 Gapped |
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78 Lambda K H a alpha sigma |
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79 0.299 0.0710 0.270 1.10 13.8 14.5 |
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80 |
13 | 81 Effective search space used: 4374000 |
0
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82 |
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83 |
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84 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 |
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85 |
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86 Length=348 |
13 | 87 Score E |
88 Sequences producing significant alignments: (Bits) Value | |
0
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89 |
13 | 90 gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA <a href=#Subject_1>732</a> 0.0 |
91 gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene... <a href=#Subject_5>711</a> 0.0 | |
92 gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodo... <a href=#Subject_4>658</a> 0.0 | |
93 gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, compl... <a href=#Subject_2>646</a> 0.0 | |
94 gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fres... <a href=#Subject_6>626</a> 0.0 | |
95 gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020... <a href=#Subject_3>151</a> 1e-71 | |
96 | |
97 | |
98 ><a name=Subject_1></a> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), | |
99 mRNA | |
0
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100 Length=1047 |
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101 |
8 | 102 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. |
0
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103 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%) |
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104 Frame = +1 |
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105 |
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106 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 |
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107 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY |
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108 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180 |
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109 |
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110 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 |
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111 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG |
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112 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360 |
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113 |
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114 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 |
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115 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP |
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116 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540 |
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117 |
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118 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 |
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119 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES |
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120 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720 |
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121 |
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122 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 |
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123 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I |
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124 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900 |
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125 |
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126 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348 |
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127 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA |
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128 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044 |
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129 |
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130 |
13 | 131 ><a name=Subject_5></a> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene |
132 for rhodopsin, complete cds | |
133 Length=1047 | |
0
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134 |
13 | 135 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust. |
136 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%) | |
137 Frame = +1 | |
138 | |
139 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
140 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY | |
141 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180 | |
142 | |
143 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
144 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG | |
145 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360 | |
0
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146 |
13 | 147 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 |
148 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP | |
149 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540 | |
150 | |
151 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
152 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES | |
153 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720 | |
0
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154 |
13 | 155 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 |
156 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+ | |
157 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900 | |
158 | |
159 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348 | |
160 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA | |
161 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044 | |
0
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162 |
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163 |
13 | 164 ><a name=Subject_4></a> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin |
165 (RHO) mRNA, partial cds | |
166 Length=983 | |
167 | |
168 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. | |
169 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%) | |
170 Frame = +1 | |
0
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171 |
13 | 172 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 |
173 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT | |
174 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 | |
175 | |
176 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130 | |
177 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV | |
178 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360 | |
0
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179 |
13 | 180 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190 |
181 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID | |
182 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540 | |
183 | |
184 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250 | |
185 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV | |
186 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720 | |
0
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187 |
13 | 188 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310 |
189 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN | |
190 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900 | |
191 | |
192 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336 | |
193 KQFRNCMLTT+CCGKNPLGDDEAS T | |
194 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978 | |
195 | |
196 | |
197 ><a name=Subject_2></a> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
198 cds | |
0
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199 Length=1574 |
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200 |
8 | 201 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust. |
0
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202 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%) |
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203 Frame = +3 |
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204 |
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205 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 |
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206 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY |
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207 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221 |
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208 |
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209 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 |
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210 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG |
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211 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401 |
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212 |
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213 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 |
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214 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP |
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215 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581 |
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216 |
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217 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 |
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218 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES |
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219 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761 |
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220 |
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221 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 |
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222 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I |
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223 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941 |
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224 |
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225 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341 |
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226 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE |
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227 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067 |
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228 |
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229 |
13 | 230 ><a name=Subject_6></a> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh |
0
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231 water form rod opsin, complete cds |
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232 Length=1344 |
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233 |
8 | 234 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. |
0
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235 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%) |
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236 Frame = +2 |
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237 |
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238 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 |
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239 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY |
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240 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202 |
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241 |
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242 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 |
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243 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG |
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244 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382 |
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245 |
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246 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 |
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247 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP |
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248 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562 |
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249 |
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250 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 |
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251 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES |
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252 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742 |
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253 |
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254 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 |
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255 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+ |
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256 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922 |
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257 |
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258 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341 |
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259 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE |
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260 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048 |
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261 |
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262 |
13 | 263 ><a name=Subject_3></a> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 |
264 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
265 Length=4301 | |
266 | |
267 Score = 151 bits (342), Expect(2) = 1e-71, Method: Compositional matrix adjust. | |
268 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%) | |
269 Frame = +3 | |
270 | |
271 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298 | |
272 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+ | |
273 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326 | |
274 | |
275 Query 299 AIYNPVIYIMMNKQ 312 | |
276 +IYNPVIYIMMNKQ | |
277 Sbjct 3327 SIYNPVIYIMMNKQ 3368 | |
278 | |
279 | |
280 Score = 126 bits (284), Expect(2) = 1e-71, Method: Compositional matrix adjust. | |
281 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%) | |
282 Frame = +2 | |
283 | |
284 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235 | |
285 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE + | |
286 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031 | |
287 | |
288 | |
289 Score = 229 bits (523), Expect = 3e-67, Method: Compositional matrix adjust. | |
290 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%) | |
291 Frame = +1 | |
292 | |
293 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 | |
294 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT | |
295 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 | |
296 | |
297 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121 | |
298 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG | |
299 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333 | |
300 | |
301 | |
302 Score = 122 bits (276), Expect = 2e-32, Method: Compositional matrix adjust. | |
303 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%) | |
304 Frame = +3 | |
305 | |
306 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177 | |
307 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR | |
308 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580 | |
309 | |
310 | |
311 Score = 57.7 bits (125), Expect = 4e-12, Method: Compositional matrix adjust. | |
312 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%) | |
313 Frame = +1 | |
314 | |
315 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337 | |
316 QFRNCMLTT+CCGKNPLGDDEAS T | |
317 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299 | |
318 | |
319 | |
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320 |
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321 Lambda K H a alpha |
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322 0.351 0.182 0.707 0.522 1.92 |
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323 |
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324 Gapped |
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325 Lambda K H a alpha sigma |
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326 0.299 0.0710 0.270 1.10 13.8 14.5 |
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327 |
13 | 328 Effective search space used: 1049670 |
329 | |
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330 |
13 | 331 Database: User specified sequence set (Input: rhodopsin_nucs.fasta). |
332 Posted date: Unknown | |
333 Number of letters in database: 10,296 | |
334 Number of sequences in database: 6 | |
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335 |
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336 |
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337 |
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338 Matrix: BLOSUM80 |
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339 Gap Penalties: Existence: 10, Extension: 1 |
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340 Neighboring words threshold: 14 |
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341 Window for multiple hits: 25 |
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342 </PRE> |
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343 </BODY> |
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344 </HTML> |