Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/blastx_rhodopsin_vs_four_human.xml @ 39:5dd84f7ab575 draft
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 022191902de1bae6ac6570b33284287c4854ae76-dirty
author | peterjc |
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date | Tue, 23 Oct 2018 12:59:33 -0400 |
parents | 13aa389f4eeb |
children | fa7f92b81db1 |
rev | line source |
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1 <?xml version="1.0"?> |
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
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3 <BlastOutput> |
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4 <BlastOutput_program>blastx</BlastOutput_program> |
31
13aa389f4eeb
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 16ef84e19ea373838bbfb921b9ef2cd4b02b8788-dirty
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5 <BlastOutput_version>BLASTX 2.7.1+</BlastOutput_version> |
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
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7 <BlastOutput_db></BlastOutput_db> |
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> |
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9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> |
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10 <BlastOutput_query-len>1047</BlastOutput_query-len> |
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11 <BlastOutput_param> |
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12 <Parameters> |
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix> |
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14 <Parameters_expect>1e-10</Parameters_expect> |
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15 <Parameters_gap-open>11</Parameters_gap-open> |
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16 <Parameters_gap-extend>1</Parameters_gap-extend> |
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17 <Parameters_filter>L;</Parameters_filter> |
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18 </Parameters> |
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19 </BlastOutput_param> |
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20 <BlastOutput_iterations> |
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21 <Iteration> |
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22 <Iteration_iter-num>1</Iteration_iter-num> |
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23 <Iteration_query-ID>Query_1</Iteration_query-ID> |
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24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> |
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25 <Iteration_query-len>1047</Iteration_query-len> |
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26 <Iteration_hits> |
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27 <Hit> |
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28 <Hit_num>1</Hit_num> |
13 | 29 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id> |
0
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30 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> |
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31 <Hit_accession>Subject_4</Hit_accession> |
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32 <Hit_len>348</Hit_len> |
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33 <Hit_hsps> |
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34 <Hsp> |
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35 <Hsp_num>1</Hsp_num> |
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36 <Hsp_bit-score>639.032</Hsp_bit-score> |
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37 <Hsp_score>1647</Hsp_score> |
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38 <Hsp_evalue>0</Hsp_evalue> |
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39 <Hsp_query-from>1</Hsp_query-from> |
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40 <Hsp_query-to>1044</Hsp_query-to> |
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41 <Hsp_hit-from>1</Hsp_hit-from> |
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42 <Hsp_hit-to>348</Hsp_hit-to> |
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43 <Hsp_query-frame>1</Hsp_query-frame> |
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44 <Hsp_hit-frame>0</Hsp_hit-frame> |
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45 <Hsp_identity>336</Hsp_identity> |
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46 <Hsp_positive>343</Hsp_positive> |
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47 <Hsp_gaps>0</Hsp_gaps> |
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48 <Hsp_align-len>348</Hsp_align-len> |
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49 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> |
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50 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> |
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51 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> |
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52 </Hsp> |
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53 </Hit_hsps> |
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54 </Hit> |
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55 </Iteration_hits> |
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56 <Iteration_stat> |
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57 <Statistics> |
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58 <Statistics_db-num>0</Statistics_db-num> |
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59 <Statistics_db-len>0</Statistics_db-len> |
13 | 60 <Statistics_hsp-len>45</Statistics_hsp-len> |
61 <Statistics_eff-space>947568</Statistics_eff-space> | |
0
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62 <Statistics_kappa>0.041</Statistics_kappa> |
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63 <Statistics_lambda>0.267</Statistics_lambda> |
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64 <Statistics_entropy>0.14</Statistics_entropy> |
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65 </Statistics> |
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66 </Iteration_stat> |
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67 </Iteration> |
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68 <Iteration> |
13 | 69 <Iteration_iter-num>2</Iteration_iter-num> |
0
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70 <Iteration_query-ID>Query_2</Iteration_query-ID> |
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71 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> |
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72 <Iteration_query-len>1574</Iteration_query-len> |
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73 <Iteration_hits> |
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74 <Hit> |
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75 <Hit_num>1</Hit_num> |
13 | 76 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id> |
0
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77 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> |
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78 <Hit_accession>Subject_4</Hit_accession> |
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79 <Hit_len>348</Hit_len> |
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80 <Hit_hsps> |
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81 <Hsp> |
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82 <Hsp_num>1</Hsp_num> |
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83 <Hsp_bit-score>551.206</Hsp_bit-score> |
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84 <Hsp_score>1419</Hsp_score> |
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85 <Hsp_evalue>0</Hsp_evalue> |
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86 <Hsp_query-from>42</Hsp_query-from> |
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87 <Hsp_query-to>1037</Hsp_query-to> |
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88 <Hsp_hit-from>1</Hsp_hit-from> |
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89 <Hsp_hit-to>332</Hsp_hit-to> |
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90 <Hsp_query-frame>3</Hsp_query-frame> |
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91 <Hsp_hit-frame>0</Hsp_hit-frame> |
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92 <Hsp_identity>283</Hsp_identity> |
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93 <Hsp_positive>315</Hsp_positive> |
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94 <Hsp_gaps>0</Hsp_gaps> |
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95 <Hsp_align-len>332</Hsp_align-len> |
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96 <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> |
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97 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> |
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98 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> |
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99 </Hsp> |
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100 </Hit_hsps> |
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101 </Hit> |
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102 </Iteration_hits> |
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103 <Iteration_stat> |
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104 <Statistics> |
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105 <Statistics_db-num>0</Statistics_db-num> |
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106 <Statistics_db-len>0</Statistics_db-len> |
13 | 107 <Statistics_hsp-len>48</Statistics_hsp-len> |
108 <Statistics_eff-space>1477980</Statistics_eff-space> | |
0
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109 <Statistics_kappa>0.041</Statistics_kappa> |
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110 <Statistics_lambda>0.267</Statistics_lambda> |
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111 <Statistics_entropy>0.14</Statistics_entropy> |
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112 </Statistics> |
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113 </Iteration_stat> |
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114 </Iteration> |
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115 <Iteration> |
13 | 116 <Iteration_iter-num>3</Iteration_iter-num> |
0
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117 <Iteration_query-ID>Query_3</Iteration_query-ID> |
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118 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> |
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119 <Iteration_query-len>4301</Iteration_query-len> |
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120 <Iteration_hits> |
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121 <Hit> |
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122 <Hit_num>1</Hit_num> |
13 | 123 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id> |
0
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124 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> |
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125 <Hit_accession>Subject_4</Hit_accession> |
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126 <Hit_len>348</Hit_len> |
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127 <Hit_hsps> |
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128 <Hsp> |
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129 <Hsp_num>1</Hsp_num> |
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130 <Hsp_bit-score>220.705</Hsp_bit-score> |
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131 <Hsp_score>561</Hsp_score> |
13 | 132 <Hsp_evalue>3.78353e-67</Hsp_evalue> |
0
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133 <Hsp_query-from>1</Hsp_query-from> |
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134 <Hsp_query-to>333</Hsp_query-to> |
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135 <Hsp_hit-from>11</Hsp_hit-from> |
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136 <Hsp_hit-to>121</Hsp_hit-to> |
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137 <Hsp_query-frame>1</Hsp_query-frame> |
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138 <Hsp_hit-frame>0</Hsp_hit-frame> |
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139 <Hsp_identity>107</Hsp_identity> |
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140 <Hsp_positive>109</Hsp_positive> |
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141 <Hsp_gaps>0</Hsp_gaps> |
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142 <Hsp_align-len>111</Hsp_align-len> |
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143 <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> |
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144 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> |
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145 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> |
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146 </Hsp> |
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147 <Hsp> |
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148 <Hsp_num>2</Hsp_num> |
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149 <Hsp_bit-score>127.487</Hsp_bit-score> |
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150 <Hsp_score>319</Hsp_score> |
13 | 151 <Hsp_evalue>4.12812e-35</Hsp_evalue> |
0
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152 <Hsp_query-from>3174</Hsp_query-from> |
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153 <Hsp_query-to>3368</Hsp_query-to> |
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154 <Hsp_hit-from>248</Hsp_hit-from> |
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155 <Hsp_hit-to>312</Hsp_hit-to> |
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156 <Hsp_query-frame>3</Hsp_query-frame> |
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157 <Hsp_hit-frame>0</Hsp_hit-frame> |
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158 <Hsp_identity>60</Hsp_identity> |
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159 <Hsp_positive>64</Hsp_positive> |
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160 <Hsp_gaps>0</Hsp_gaps> |
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161 <Hsp_align-len>65</Hsp_align-len> |
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162 <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> |
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163 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> |
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164 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> |
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165 </Hsp> |
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166 <Hsp> |
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167 <Hsp_num>3</Hsp_num> |
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168 <Hsp_bit-score>121.709</Hsp_bit-score> |
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169 <Hsp_score>304</Hsp_score> |
13 | 170 <Hsp_evalue>3.99023e-33</Hsp_evalue> |
0
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171 <Hsp_query-from>2855</Hsp_query-from> |
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172 <Hsp_query-to>3031</Hsp_query-to> |
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173 <Hsp_hit-from>177</Hsp_hit-from> |
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174 <Hsp_hit-to>235</Hsp_hit-to> |
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175 <Hsp_query-frame>2</Hsp_query-frame> |
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176 <Hsp_hit-frame>0</Hsp_hit-frame> |
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177 <Hsp_identity>54</Hsp_identity> |
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178 <Hsp_positive>57</Hsp_positive> |
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179 <Hsp_gaps>0</Hsp_gaps> |
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180 <Hsp_align-len>59</Hsp_align-len> |
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181 <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_qseq> |
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182 <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_hseq> |
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183 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> |
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184 </Hsp> |
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185 <Hsp> |
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186 <Hsp_num>4</Hsp_num> |
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187 <Hsp_bit-score>97.0561</Hsp_bit-score> |
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188 <Hsp_score>240</Hsp_score> |
13 | 189 <Hsp_evalue>7.46148e-25</Hsp_evalue> |
0
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190 <Hsp_query-from>1404</Hsp_query-from> |
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191 <Hsp_query-to>1580</Hsp_query-to> |
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192 <Hsp_hit-from>119</Hsp_hit-from> |
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193 <Hsp_hit-to>177</Hsp_hit-to> |
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194 <Hsp_query-frame>3</Hsp_query-frame> |
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195 <Hsp_hit-frame>0</Hsp_hit-frame> |
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196 <Hsp_identity>55</Hsp_identity> |
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197 <Hsp_positive>56</Hsp_positive> |
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198 <Hsp_gaps>0</Hsp_gaps> |
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199 <Hsp_align-len>59</Hsp_align-len> |
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200 <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> |
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201 <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> |
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202 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> |
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203 </Hsp> |
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204 <Hsp> |
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205 <Hsp_num>5</Hsp_num> |
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206 <Hsp_bit-score>56.9954</Hsp_bit-score> |
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207 <Hsp_score>136</Hsp_score> |
13 | 208 <Hsp_evalue>1.12842e-11</Hsp_evalue> |
0
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209 <Hsp_query-from>4222</Hsp_query-from> |
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210 <Hsp_query-to>4299</Hsp_query-to> |
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211 <Hsp_hit-from>312</Hsp_hit-from> |
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212 <Hsp_hit-to>337</Hsp_hit-to> |
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213 <Hsp_query-frame>1</Hsp_query-frame> |
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214 <Hsp_hit-frame>0</Hsp_hit-frame> |
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215 <Hsp_identity>23</Hsp_identity> |
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216 <Hsp_positive>24</Hsp_positive> |
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217 <Hsp_gaps>0</Hsp_gaps> |
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218 <Hsp_align-len>26</Hsp_align-len> |
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219 <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_qseq> |
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220 <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_hseq> |
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221 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> |
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222 </Hsp> |
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223 </Hit_hsps> |
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224 </Hit> |
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225 </Iteration_hits> |
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226 <Iteration_stat> |
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227 <Statistics> |
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228 <Statistics_db-num>0</Statistics_db-num> |
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229 <Statistics_db-len>0</Statistics_db-len> |
13 | 230 <Statistics_hsp-len>55</Statistics_hsp-len> |
231 <Statistics_eff-space>4240106</Statistics_eff-space> | |
0
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232 <Statistics_kappa>0.041</Statistics_kappa> |
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233 <Statistics_lambda>0.267</Statistics_lambda> |
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234 <Statistics_entropy>0.14</Statistics_entropy> |
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235 </Statistics> |
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236 </Iteration_stat> |
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237 </Iteration> |
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238 <Iteration> |
13 | 239 <Iteration_iter-num>4</Iteration_iter-num> |
0
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240 <Iteration_query-ID>Query_4</Iteration_query-ID> |
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241 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> |
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242 <Iteration_query-len>983</Iteration_query-len> |
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243 <Iteration_hits> |
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244 <Hit> |
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245 <Hit_num>1</Hit_num> |
13 | 246 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id> |
0
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247 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> |
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248 <Hit_accession>Subject_4</Hit_accession> |
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249 <Hit_len>348</Hit_len> |
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250 <Hit_hsps> |
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251 <Hsp> |
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252 <Hsp_num>1</Hsp_num> |
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253 <Hsp_bit-score>589.341</Hsp_bit-score> |
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254 <Hsp_score>1518</Hsp_score> |
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255 <Hsp_evalue>0</Hsp_evalue> |
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256 <Hsp_query-from>1</Hsp_query-from> |
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257 <Hsp_query-to>978</Hsp_query-to> |
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258 <Hsp_hit-from>11</Hsp_hit-from> |
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259 <Hsp_hit-to>336</Hsp_hit-to> |
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260 <Hsp_query-frame>1</Hsp_query-frame> |
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261 <Hsp_hit-frame>0</Hsp_hit-frame> |
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262 <Hsp_identity>310</Hsp_identity> |
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263 <Hsp_positive>322</Hsp_positive> |
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264 <Hsp_gaps>0</Hsp_gaps> |
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265 <Hsp_align-len>326</Hsp_align-len> |
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266 <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> |
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267 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> |
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268 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> |
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269 </Hsp> |
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270 </Hit_hsps> |
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271 </Hit> |
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272 </Iteration_hits> |
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273 <Iteration_stat> |
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274 <Statistics> |
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275 <Statistics_db-num>0</Statistics_db-num> |
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276 <Statistics_db-len>0</Statistics_db-len> |
13 | 277 <Statistics_hsp-len>44</Statistics_hsp-len> |
278 <Statistics_eff-space>883243</Statistics_eff-space> | |
0
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279 <Statistics_kappa>0.041</Statistics_kappa> |
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280 <Statistics_lambda>0.267</Statistics_lambda> |
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281 <Statistics_entropy>0.14</Statistics_entropy> |
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282 </Statistics> |
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283 </Iteration_stat> |
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284 </Iteration> |
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285 <Iteration> |
13 | 286 <Iteration_iter-num>5</Iteration_iter-num> |
0
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287 <Iteration_query-ID>Query_5</Iteration_query-ID> |
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288 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> |
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289 <Iteration_query-len>1047</Iteration_query-len> |
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290 <Iteration_hits> |
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291 <Hit> |
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292 <Hit_num>1</Hit_num> |
13 | 293 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id> |
0
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294 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> |
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295 <Hit_accession>Subject_4</Hit_accession> |
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296 <Hit_len>348</Hit_len> |
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297 <Hit_hsps> |
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298 <Hsp> |
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299 <Hsp_num>1</Hsp_num> |
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300 <Hsp_bit-score>619.387</Hsp_bit-score> |
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301 <Hsp_score>1596</Hsp_score> |
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302 <Hsp_evalue>0</Hsp_evalue> |
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303 <Hsp_query-from>1</Hsp_query-from> |
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304 <Hsp_query-to>1044</Hsp_query-to> |
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305 <Hsp_hit-from>1</Hsp_hit-from> |
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306 <Hsp_hit-to>348</Hsp_hit-to> |
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307 <Hsp_query-frame>1</Hsp_query-frame> |
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308 <Hsp_hit-frame>0</Hsp_hit-frame> |
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309 <Hsp_identity>325</Hsp_identity> |
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310 <Hsp_positive>337</Hsp_positive> |
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311 <Hsp_gaps>0</Hsp_gaps> |
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312 <Hsp_align-len>348</Hsp_align-len> |
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313 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> |
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314 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> |
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315 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> |
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316 </Hsp> |
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317 </Hit_hsps> |
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318 </Hit> |
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319 </Iteration_hits> |
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320 <Iteration_stat> |
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321 <Statistics> |
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322 <Statistics_db-num>0</Statistics_db-num> |
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323 <Statistics_db-len>0</Statistics_db-len> |
13 | 324 <Statistics_hsp-len>45</Statistics_hsp-len> |
325 <Statistics_eff-space>947568</Statistics_eff-space> | |
0
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326 <Statistics_kappa>0.041</Statistics_kappa> |
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327 <Statistics_lambda>0.267</Statistics_lambda> |
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328 <Statistics_entropy>0.14</Statistics_entropy> |
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329 </Statistics> |
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330 </Iteration_stat> |
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331 </Iteration> |
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332 <Iteration> |
13 | 333 <Iteration_iter-num>6</Iteration_iter-num> |
0
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334 <Iteration_query-ID>Query_6</Iteration_query-ID> |
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335 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> |
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336 <Iteration_query-len>1344</Iteration_query-len> |
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337 <Iteration_hits> |
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338 <Hit> |
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339 <Hit_num>1</Hit_num> |
13 | 340 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id> |
0
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341 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> |
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342 <Hit_accession>Subject_4</Hit_accession> |
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343 <Hit_len>348</Hit_len> |
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344 <Hit_hsps> |
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345 <Hsp> |
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346 <Hsp_num>1</Hsp_num> |
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347 <Hsp_bit-score>532.717</Hsp_bit-score> |
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348 <Hsp_score>1371</Hsp_score> |
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349 <Hsp_evalue>0</Hsp_evalue> |
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350 <Hsp_query-from>23</Hsp_query-from> |
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351 <Hsp_query-to>1021</Hsp_query-to> |
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352 <Hsp_hit-from>1</Hsp_hit-from> |
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353 <Hsp_hit-to>333</Hsp_hit-to> |
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354 <Hsp_query-frame>2</Hsp_query-frame> |
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355 <Hsp_hit-frame>0</Hsp_hit-frame> |
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356 <Hsp_identity>272</Hsp_identity> |
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357 <Hsp_positive>307</Hsp_positive> |
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358 <Hsp_gaps>0</Hsp_gaps> |
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359 <Hsp_align-len>333</Hsp_align-len> |
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360 <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG</Hsp_qseq> |
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361 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA</Hsp_hseq> |
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362 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++ </Hsp_midline> |
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363 </Hsp> |
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364 </Hit_hsps> |
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365 </Hit> |
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366 </Iteration_hits> |
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367 <Iteration_stat> |
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368 <Statistics> |
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369 <Statistics_db-num>0</Statistics_db-num> |
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370 <Statistics_db-len>0</Statistics_db-len> |
13 | 371 <Statistics_hsp-len>47</Statistics_hsp-len> |
372 <Statistics_eff-space>1246709</Statistics_eff-space> | |
0
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373 <Statistics_kappa>0.041</Statistics_kappa> |
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374 <Statistics_lambda>0.267</Statistics_lambda> |
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375 <Statistics_entropy>0.14</Statistics_entropy> |
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376 </Statistics> |
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377 </Iteration_stat> |
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378 </Iteration> |
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379 </BlastOutput_iterations> |
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380 </BlastOutput> |
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381 |