Mercurial > repos > devteam > ncbi_blast_plus

annotate test-data/blastx_rhodopsin_vs_four_human.xml @ 24:3b4efe26da79 draft

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planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit dc88568c900086550ce206dd83bad65e991df743-dirty
author peterjc
date Fri, 15 Sep 2017 10:02:56 -0400
parents 4dcc9429d6d2
children 13aa389f4eeb
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastx</BlastOutput_program>
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5 <BlastOutput_version>BLASTX 2.5.0+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
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9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def>
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10 <BlastOutput_query-len>1047</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
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14 <Parameters_expect>1e-10</Parameters_expect>
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15 <Parameters_gap-open>11</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>L;</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>Query_1</Iteration_query-ID>
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24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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25 <Iteration_query-len>1047</Iteration_query-len>
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26 <Iteration_hits>
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27 <Hit>
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28 <Hit_num>1</Hit_num>
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29 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
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30 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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31 <Hit_accession>Subject_4</Hit_accession>
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32 <Hit_len>348</Hit_len>
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33 <Hit_hsps>
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34 <Hsp>
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35 <Hsp_num>1</Hsp_num>
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36 <Hsp_bit-score>639.032</Hsp_bit-score>
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37 <Hsp_score>1647</Hsp_score>
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38 <Hsp_evalue>0</Hsp_evalue>
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39 <Hsp_query-from>1</Hsp_query-from>
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40 <Hsp_query-to>1044</Hsp_query-to>
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41 <Hsp_hit-from>1</Hsp_hit-from>
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42 <Hsp_hit-to>348</Hsp_hit-to>
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43 <Hsp_query-frame>1</Hsp_query-frame>
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44 <Hsp_hit-frame>0</Hsp_hit-frame>
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45 <Hsp_identity>336</Hsp_identity>
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46 <Hsp_positive>343</Hsp_positive>
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47 <Hsp_gaps>0</Hsp_gaps>
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48 <Hsp_align-len>348</Hsp_align-len>
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49 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq>
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50 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq>
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51 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
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52 </Hsp>
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53 </Hit_hsps>
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54 </Hit>
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55 </Iteration_hits>
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56 <Iteration_stat>
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57 <Statistics>
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58 <Statistics_db-num>0</Statistics_db-num>
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59 <Statistics_db-len>0</Statistics_db-len>
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60 <Statistics_hsp-len>45</Statistics_hsp-len>
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61 <Statistics_eff-space>947568</Statistics_eff-space>
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62 <Statistics_kappa>0.041</Statistics_kappa>
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63 <Statistics_lambda>0.267</Statistics_lambda>
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64 <Statistics_entropy>0.14</Statistics_entropy>
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65 </Statistics>
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66 </Iteration_stat>
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67 </Iteration>
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68 <Iteration>
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69 <Iteration_iter-num>2</Iteration_iter-num>
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70 <Iteration_query-ID>Query_2</Iteration_query-ID>
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71 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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72 <Iteration_query-len>1574</Iteration_query-len>
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73 <Iteration_hits>
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74 <Hit>
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75 <Hit_num>1</Hit_num>
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76 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
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77 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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78 <Hit_accession>Subject_4</Hit_accession>
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79 <Hit_len>348</Hit_len>
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80 <Hit_hsps>
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81 <Hsp>
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82 <Hsp_num>1</Hsp_num>
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83 <Hsp_bit-score>551.206</Hsp_bit-score>
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84 <Hsp_score>1419</Hsp_score>
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85 <Hsp_evalue>0</Hsp_evalue>
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86 <Hsp_query-from>42</Hsp_query-from>
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87 <Hsp_query-to>1037</Hsp_query-to>
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88 <Hsp_hit-from>1</Hsp_hit-from>
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89 <Hsp_hit-to>332</Hsp_hit-to>
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90 <Hsp_query-frame>3</Hsp_query-frame>
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91 <Hsp_hit-frame>0</Hsp_hit-frame>
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92 <Hsp_identity>283</Hsp_identity>
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93 <Hsp_positive>315</Hsp_positive>
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94 <Hsp_gaps>0</Hsp_gaps>
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95 <Hsp_align-len>332</Hsp_align-len>
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96 <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq>
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97 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq>
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98 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline>
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99 </Hsp>
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100 </Hit_hsps>
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101 </Hit>
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102 </Iteration_hits>
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peterjc
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103 <Iteration_stat>
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peterjc
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104 <Statistics>
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peterjc
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105 <Statistics_db-num>0</Statistics_db-num>
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106 <Statistics_db-len>0</Statistics_db-len>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
107 <Statistics_hsp-len>48</Statistics_hsp-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
108 <Statistics_eff-space>1477980</Statistics_eff-space>
0
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peterjc
parents:
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109 <Statistics_kappa>0.041</Statistics_kappa>
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peterjc
parents:
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110 <Statistics_lambda>0.267</Statistics_lambda>
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peterjc
parents:
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111 <Statistics_entropy>0.14</Statistics_entropy>
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peterjc
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112 </Statistics>
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peterjc
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113 </Iteration_stat>
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114 </Iteration>
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peterjc
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115 <Iteration>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
diff changeset
116 <Iteration_iter-num>3</Iteration_iter-num>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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117 <Iteration_query-ID>Query_3</Iteration_query-ID>
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peterjc
parents:
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118 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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119 <Iteration_query-len>4301</Iteration_query-len>
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peterjc
parents:
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120 <Iteration_hits>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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121 <Hit>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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122 <Hit_num>1</Hit_num>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
123 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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124 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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125 <Hit_accession>Subject_4</Hit_accession>
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peterjc
parents:
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126 <Hit_len>348</Hit_len>
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peterjc
parents:
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127 <Hit_hsps>
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peterjc
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128 <Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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129 <Hsp_num>1</Hsp_num>
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130 <Hsp_bit-score>220.705</Hsp_bit-score>
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parents:
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131 <Hsp_score>561</Hsp_score>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
132 <Hsp_evalue>3.78353e-67</Hsp_evalue>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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133 <Hsp_query-from>1</Hsp_query-from>
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134 <Hsp_query-to>333</Hsp_query-to>
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parents:
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135 <Hsp_hit-from>11</Hsp_hit-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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136 <Hsp_hit-to>121</Hsp_hit-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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137 <Hsp_query-frame>1</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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138 <Hsp_hit-frame>0</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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139 <Hsp_identity>107</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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140 <Hsp_positive>109</Hsp_positive>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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141 <Hsp_gaps>0</Hsp_gaps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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142 <Hsp_align-len>111</Hsp_align-len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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143 <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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144 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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145 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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146 </Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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147 <Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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148 <Hsp_num>2</Hsp_num>
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149 <Hsp_bit-score>127.487</Hsp_bit-score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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parents:
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150 <Hsp_score>319</Hsp_score>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
151 <Hsp_evalue>4.12812e-35</Hsp_evalue>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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152 <Hsp_query-from>3174</Hsp_query-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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153 <Hsp_query-to>3368</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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154 <Hsp_hit-from>248</Hsp_hit-from>
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peterjc
parents:
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155 <Hsp_hit-to>312</Hsp_hit-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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156 <Hsp_query-frame>3</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
157 <Hsp_hit-frame>0</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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158 <Hsp_identity>60</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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159 <Hsp_positive>64</Hsp_positive>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
160 <Hsp_gaps>0</Hsp_gaps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
161 <Hsp_align-len>65</Hsp_align-len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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162 <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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163 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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164 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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165 </Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
166 <Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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167 <Hsp_num>3</Hsp_num>
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peterjc
parents:
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168 <Hsp_bit-score>121.709</Hsp_bit-score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
169 <Hsp_score>304</Hsp_score>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
170 <Hsp_evalue>3.99023e-33</Hsp_evalue>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
171 <Hsp_query-from>2855</Hsp_query-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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172 <Hsp_query-to>3031</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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173 <Hsp_hit-from>177</Hsp_hit-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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174 <Hsp_hit-to>235</Hsp_hit-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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175 <Hsp_query-frame>2</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
176 <Hsp_hit-frame>0</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
177 <Hsp_identity>54</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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178 <Hsp_positive>57</Hsp_positive>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
179 <Hsp_gaps>0</Hsp_gaps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
180 <Hsp_align-len>59</Hsp_align-len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
181 <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
182 <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
183 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
184 </Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
185 <Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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186 <Hsp_num>4</Hsp_num>
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peterjc
parents:
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187 <Hsp_bit-score>97.0561</Hsp_bit-score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
188 <Hsp_score>240</Hsp_score>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
189 <Hsp_evalue>7.46148e-25</Hsp_evalue>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
190 <Hsp_query-from>1404</Hsp_query-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
191 <Hsp_query-to>1580</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
192 <Hsp_hit-from>119</Hsp_hit-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
193 <Hsp_hit-to>177</Hsp_hit-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
194 <Hsp_query-frame>3</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
195 <Hsp_hit-frame>0</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
196 <Hsp_identity>55</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
197 <Hsp_positive>56</Hsp_positive>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
198 <Hsp_gaps>0</Hsp_gaps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
199 <Hsp_align-len>59</Hsp_align-len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
200 <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
201 <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
202 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
203 </Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
204 <Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
205 <Hsp_num>5</Hsp_num>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
206 <Hsp_bit-score>56.9954</Hsp_bit-score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
207 <Hsp_score>136</Hsp_score>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
208 <Hsp_evalue>1.12842e-11</Hsp_evalue>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
209 <Hsp_query-from>4222</Hsp_query-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
210 <Hsp_query-to>4299</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
211 <Hsp_hit-from>312</Hsp_hit-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
212 <Hsp_hit-to>337</Hsp_hit-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
213 <Hsp_query-frame>1</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
214 <Hsp_hit-frame>0</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
215 <Hsp_identity>23</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
216 <Hsp_positive>24</Hsp_positive>
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peterjc
parents:
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217 <Hsp_gaps>0</Hsp_gaps>
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218 <Hsp_align-len>26</Hsp_align-len>
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peterjc
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219 <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_qseq>
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peterjc
parents:
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220 <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_hseq>
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peterjc
parents:
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221 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline>
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peterjc
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222 </Hsp>
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peterjc
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223 </Hit_hsps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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224 </Hit>
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peterjc
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225 </Iteration_hits>
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peterjc
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226 <Iteration_stat>
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227 <Statistics>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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228 <Statistics_db-num>0</Statistics_db-num>
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parents:
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229 <Statistics_db-len>0</Statistics_db-len>
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4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
230 <Statistics_hsp-len>55</Statistics_hsp-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
231 <Statistics_eff-space>4240106</Statistics_eff-space>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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232 <Statistics_kappa>0.041</Statistics_kappa>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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233 <Statistics_lambda>0.267</Statistics_lambda>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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234 <Statistics_entropy>0.14</Statistics_entropy>
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peterjc
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235 </Statistics>
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peterjc
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236 </Iteration_stat>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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237 </Iteration>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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238 <Iteration>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
239 <Iteration_iter-num>4</Iteration_iter-num>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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240 <Iteration_query-ID>Query_4</Iteration_query-ID>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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241 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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242 <Iteration_query-len>983</Iteration_query-len>
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peterjc
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243 <Iteration_hits>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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244 <Hit>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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245 <Hit_num>1</Hit_num>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
246 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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247 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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248 <Hit_accession>Subject_4</Hit_accession>
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peterjc
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249 <Hit_len>348</Hit_len>
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peterjc
parents:
diff changeset
250 <Hit_hsps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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251 <Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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252 <Hsp_num>1</Hsp_num>
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253 <Hsp_bit-score>589.341</Hsp_bit-score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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254 <Hsp_score>1518</Hsp_score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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255 <Hsp_evalue>0</Hsp_evalue>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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256 <Hsp_query-from>1</Hsp_query-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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257 <Hsp_query-to>978</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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258 <Hsp_hit-from>11</Hsp_hit-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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259 <Hsp_hit-to>336</Hsp_hit-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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260 <Hsp_query-frame>1</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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261 <Hsp_hit-frame>0</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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262 <Hsp_identity>310</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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263 <Hsp_positive>322</Hsp_positive>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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264 <Hsp_gaps>0</Hsp_gaps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
265 <Hsp_align-len>326</Hsp_align-len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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266 <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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267 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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268 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
269 </Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
270 </Hit_hsps>
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peterjc
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diff changeset
271 </Hit>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
272 </Iteration_hits>
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peterjc
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273 <Iteration_stat>
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peterjc
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274 <Statistics>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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275 <Statistics_db-num>0</Statistics_db-num>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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parents:
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276 <Statistics_db-len>0</Statistics_db-len>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
277 <Statistics_hsp-len>44</Statistics_hsp-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
278 <Statistics_eff-space>883243</Statistics_eff-space>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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279 <Statistics_kappa>0.041</Statistics_kappa>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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280 <Statistics_lambda>0.267</Statistics_lambda>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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281 <Statistics_entropy>0.14</Statistics_entropy>
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peterjc
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282 </Statistics>
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peterjc
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283 </Iteration_stat>
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peterjc
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diff changeset
284 </Iteration>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
285 <Iteration>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
286 <Iteration_iter-num>5</Iteration_iter-num>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
287 <Iteration_query-ID>Query_5</Iteration_query-ID>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
288 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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289 <Iteration_query-len>1047</Iteration_query-len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
290 <Iteration_hits>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
291 <Hit>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
292 <Hit_num>1</Hit_num>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
293 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
294 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
295 <Hit_accession>Subject_4</Hit_accession>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
296 <Hit_len>348</Hit_len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
297 <Hit_hsps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
298 <Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
299 <Hsp_num>1</Hsp_num>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
300 <Hsp_bit-score>619.387</Hsp_bit-score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
301 <Hsp_score>1596</Hsp_score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
302 <Hsp_evalue>0</Hsp_evalue>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
303 <Hsp_query-from>1</Hsp_query-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
304 <Hsp_query-to>1044</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
305 <Hsp_hit-from>1</Hsp_hit-from>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
306 <Hsp_hit-to>348</Hsp_hit-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
307 <Hsp_query-frame>1</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
308 <Hsp_hit-frame>0</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
309 <Hsp_identity>325</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
310 <Hsp_positive>337</Hsp_positive>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
311 <Hsp_gaps>0</Hsp_gaps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
312 <Hsp_align-len>348</Hsp_align-len>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
313 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
314 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
315 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
316 </Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
317 </Hit_hsps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
318 </Hit>
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peterjc
parents:
diff changeset
319 </Iteration_hits>
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peterjc
parents:
diff changeset
320 <Iteration_stat>
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peterjc
parents:
diff changeset
321 <Statistics>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
322 <Statistics_db-num>0</Statistics_db-num>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff changeset
323 <Statistics_db-len>0</Statistics_db-len>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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324 <Statistics_hsp-len>45</Statistics_hsp-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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325 <Statistics_eff-space>947568</Statistics_eff-space>
0
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peterjc
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326 <Statistics_kappa>0.041</Statistics_kappa>
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peterjc
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327 <Statistics_lambda>0.267</Statistics_lambda>
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peterjc
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328 <Statistics_entropy>0.14</Statistics_entropy>
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329 </Statistics>
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330 </Iteration_stat>
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331 </Iteration>
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332 <Iteration>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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parents: 8
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333 <Iteration_iter-num>6</Iteration_iter-num>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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334 <Iteration_query-ID>Query_6</Iteration_query-ID>
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peterjc
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335 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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336 <Iteration_query-len>1344</Iteration_query-len>
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peterjc
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337 <Iteration_hits>
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338 <Hit>
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339 <Hit_num>1</Hit_num>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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340 <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
0
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peterjc
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341 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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peterjc
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342 <Hit_accession>Subject_4</Hit_accession>
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343 <Hit_len>348</Hit_len>
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344 <Hit_hsps>
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345 <Hsp>
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346 <Hsp_num>1</Hsp_num>
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347 <Hsp_bit-score>532.717</Hsp_bit-score>
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348 <Hsp_score>1371</Hsp_score>
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peterjc
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349 <Hsp_evalue>0</Hsp_evalue>
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350 <Hsp_query-from>23</Hsp_query-from>
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351 <Hsp_query-to>1021</Hsp_query-to>
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peterjc
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352 <Hsp_hit-from>1</Hsp_hit-from>
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peterjc
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353 <Hsp_hit-to>333</Hsp_hit-to>
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peterjc
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354 <Hsp_query-frame>2</Hsp_query-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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355 <Hsp_hit-frame>0</Hsp_hit-frame>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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356 <Hsp_identity>272</Hsp_identity>
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357 <Hsp_positive>307</Hsp_positive>
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358 <Hsp_gaps>0</Hsp_gaps>
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peterjc
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359 <Hsp_align-len>333</Hsp_align-len>
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peterjc
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360 <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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361 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA</Hsp_hseq>
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peterjc
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362 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++ </Hsp_midline>
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363 </Hsp>
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364 </Hit_hsps>
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365 </Hit>
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366 </Iteration_hits>
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367 <Iteration_stat>
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368 <Statistics>
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369 <Statistics_db-num>0</Statistics_db-num>
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370 <Statistics_db-len>0</Statistics_db-len>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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371 <Statistics_hsp-len>47</Statistics_hsp-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
372 <Statistics_eff-space>1246709</Statistics_eff-space>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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373 <Statistics_kappa>0.041</Statistics_kappa>
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374 <Statistics_lambda>0.267</Statistics_lambda>
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peterjc
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375 <Statistics_entropy>0.14</Statistics_entropy>
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376 </Statistics>
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377 </Iteration_stat>
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378 </Iteration>
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peterjc
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379 </BlastOutput_iterations>
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parents:
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380 </BlastOutput>
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381