Mercurial > repos > devteam > ncbi_blast_plus

annotate test-data/blastp_four_human_vs_rhodopsin.xml @ 51:1ebae91eb6e9 draft

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"planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 0c82b9ef284c686cbffd30582d2586e4fb52881e-dirty"
author peterjc
date Wed, 09 Sep 2020 14:32:53 +0000
parents 13aa389f4eeb
children fa7f92b81db1
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastp</BlastOutput_program>
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13aa389f4eeb planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus commit 16ef84e19ea373838bbfb921b9ef2cd4b02b8788-dirty
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5 <BlastOutput_version>BLASTP 2.7.1+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>Q9BS26</BlastOutput_query-ID>
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9 <BlastOutput_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
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10 <BlastOutput_query-len>406</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
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14 <Parameters_expect>1e-08</Parameters_expect>
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15 <Parameters_gap-open>11</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>F</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>Q9BS26</Iteration_query-ID>
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24 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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25 <Iteration_query-len>406</Iteration_query-len>
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26 <Iteration_hits>
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27 </Iteration_hits>
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28 <Iteration_stat>
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29 <Statistics>
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30 <Statistics_db-num>0</Statistics_db-num>
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31 <Statistics_db-len>0</Statistics_db-len>
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32 <Statistics_hsp-len>42</Statistics_hsp-len>
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33 <Statistics_eff-space>657748</Statistics_eff-space>
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34 <Statistics_kappa>0.041</Statistics_kappa>
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35 <Statistics_lambda>0.267</Statistics_lambda>
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36 <Statistics_entropy>0.14</Statistics_entropy>
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37 </Statistics>
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38 </Iteration_stat>
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39 <Iteration_message>No hits found</Iteration_message>
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40 </Iteration>
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41 <Iteration>
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42 <Iteration_iter-num>2</Iteration_iter-num>
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43 <Iteration_query-ID>Q9NSY1</Iteration_query-ID>
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44 <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
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45 <Iteration_query-len>1161</Iteration_query-len>
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46 <Iteration_hits>
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47 </Iteration_hits>
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48 <Iteration_stat>
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49 <Statistics>
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50 <Statistics_db-num>0</Statistics_db-num>
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51 <Statistics_db-len>0</Statistics_db-len>
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52 <Statistics_hsp-len>50</Statistics_hsp-len>
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53 <Statistics_eff-space>1954249</Statistics_eff-space>
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54 <Statistics_kappa>0.041</Statistics_kappa>
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55 <Statistics_lambda>0.267</Statistics_lambda>
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56 <Statistics_entropy>0.14</Statistics_entropy>
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57 </Statistics>
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58 </Iteration_stat>
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59 <Iteration_message>No hits found</Iteration_message>
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60 </Iteration>
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61 <Iteration>
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62 <Iteration_iter-num>3</Iteration_iter-num>
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63 <Iteration_query-ID>P06213</Iteration_query-ID>
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64 <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
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65 <Iteration_query-len>1382</Iteration_query-len>
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66 <Iteration_hits>
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67 </Iteration_hits>
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68 <Iteration_stat>
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69 <Statistics>
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70 <Statistics_db-num>0</Statistics_db-num>
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71 <Statistics_db-len>0</Statistics_db-len>
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72 <Statistics_hsp-len>51</Statistics_hsp-len>
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73 <Statistics_eff-space>2333243</Statistics_eff-space>
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74 <Statistics_kappa>0.041</Statistics_kappa>
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75 <Statistics_lambda>0.267</Statistics_lambda>
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76 <Statistics_entropy>0.14</Statistics_entropy>
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77 </Statistics>
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78 </Iteration_stat>
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79 <Iteration_message>No hits found</Iteration_message>
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80 </Iteration>
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81 <Iteration>
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82 <Iteration_iter-num>4</Iteration_iter-num>
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83 <Iteration_query-ID>P08100</Iteration_query-ID>
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84 <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
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85 <Iteration_query-len>348</Iteration_query-len>
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86 <Iteration_hits>
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87 <Hit>
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88 <Hit_num>1</Hit_num>
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89 <Hit_id>gi|57163783|ref|NP_001009242.1|</Hit_id>
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90 <Hit_def>rhodopsin [Felis catus]</Hit_def>
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91 <Hit_accession>NP_001009242</Hit_accession>
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92 <Hit_len>348</Hit_len>
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93 <Hit_hsps>
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94 <Hsp>
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95 <Hsp_num>1</Hsp_num>
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96 <Hsp_bit-score>701.049</Hsp_bit-score>
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97 <Hsp_score>1808</Hsp_score>
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98 <Hsp_evalue>0</Hsp_evalue>
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99 <Hsp_query-from>1</Hsp_query-from>
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100 <Hsp_query-to>348</Hsp_query-to>
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101 <Hsp_hit-from>1</Hsp_hit-from>
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102 <Hsp_hit-to>348</Hsp_hit-to>
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103 <Hsp_query-frame>0</Hsp_query-frame>
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104 <Hsp_hit-frame>0</Hsp_hit-frame>
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105 <Hsp_identity>336</Hsp_identity>
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106 <Hsp_positive>343</Hsp_positive>
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107 <Hsp_gaps>0</Hsp_gaps>
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108 <Hsp_align-len>348</Hsp_align-len>
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109 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
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110 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq>
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111 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
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112 </Hsp>
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113 </Hit_hsps>
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114 </Hit>
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115 <Hit>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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116 <Hit_num>2</Hit_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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117 <Hit_id>gi|223523|prf||0811197A</Hit_id>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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118 <Hit_def>rhodopsin [Bos taurus]</Hit_def>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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119 <Hit_accession>0811197A</Hit_accession>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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120 <Hit_len>347</Hit_len>
0
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121 <Hit_hsps>
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122 <Hsp>
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123 <Hsp_num>1</Hsp_num>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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124 <Hsp_bit-score>673.315</Hsp_bit-score>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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125 <Hsp_score>1736</Hsp_score>
0
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126 <Hsp_evalue>0</Hsp_evalue>
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127 <Hsp_query-from>1</Hsp_query-from>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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128 <Hsp_query-to>348</Hsp_query-to>
0
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129 <Hsp_hit-from>1</Hsp_hit-from>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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130 <Hsp_hit-to>347</Hsp_hit-to>
0
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131 <Hsp_query-frame>0</Hsp_query-frame>
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132 <Hsp_hit-frame>0</Hsp_hit-frame>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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133 <Hsp_identity>324</Hsp_identity>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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134 <Hsp_positive>336</Hsp_positive>
0
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135 <Hsp_gaps>1</Hsp_gaps>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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136 <Hsp_align-len>348</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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137 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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138 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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139 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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140 </Hsp>
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141 </Hit_hsps>
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142 </Hit>
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143 <Hit>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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144 <Hit_num>3</Hit_num>
0
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145 <Hit_id>gi|283855846|gb|ADB45242.1|</Hit_id>
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146 <Hit_def>rhodopsin [Cynopterus brachyotis]</Hit_def>
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147 <Hit_accession>ADB45242</Hit_accession>
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148 <Hit_len>328</Hit_len>
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149 <Hit_hsps>
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150 <Hsp>
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151 <Hsp_num>1</Hsp_num>
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152 <Hsp_bit-score>653.284</Hsp_bit-score>
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153 <Hsp_score>1684</Hsp_score>
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154 <Hsp_evalue>0</Hsp_evalue>
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155 <Hsp_query-from>11</Hsp_query-from>
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156 <Hsp_query-to>338</Hsp_query-to>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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157 <Hsp_hit-from>1</Hsp_hit-from>
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158 <Hsp_hit-to>328</Hsp_hit-to>
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159 <Hsp_query-frame>0</Hsp_query-frame>
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160 <Hsp_hit-frame>0</Hsp_hit-frame>
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161 <Hsp_identity>311</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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162 <Hsp_positive>321</Hsp_positive>
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163 <Hsp_gaps>0</Hsp_gaps>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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164 <Hsp_align-len>328</Hsp_align-len>
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165 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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166 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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167 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline>
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168 </Hsp>
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169 </Hit_hsps>
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170 </Hit>
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171 <Hit>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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172 <Hit_num>4</Hit_num>
0
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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173 <Hit_id>gi|283855823|gb|ADB45229.1|</Hit_id>
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174 <Hit_def>rhodopsin [Myotis pilosus]</Hit_def>
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peterjc
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175 <Hit_accession>ADB45229</Hit_accession>
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176 <Hit_len>328</Hit_len>
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177 <Hit_hsps>
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178 <Hsp>
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179 <Hsp_num>1</Hsp_num>
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180 <Hsp_bit-score>631.328</Hsp_bit-score>
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181 <Hsp_score>1627</Hsp_score>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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182 <Hsp_evalue>0</Hsp_evalue>
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183 <Hsp_query-from>11</Hsp_query-from>
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parents:
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184 <Hsp_query-to>338</Hsp_query-to>
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185 <Hsp_hit-from>1</Hsp_hit-from>
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186 <Hsp_hit-to>328</Hsp_hit-to>
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187 <Hsp_query-frame>0</Hsp_query-frame>
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188 <Hsp_hit-frame>0</Hsp_hit-frame>
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189 <Hsp_identity>311</Hsp_identity>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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190 <Hsp_positive>323</Hsp_positive>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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191 <Hsp_gaps>0</Hsp_gaps>
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peterjc
parents:
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192 <Hsp_align-len>328</Hsp_align-len>
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193 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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194 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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195 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline>
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196 </Hsp>
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peterjc
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197 </Hit_hsps>
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198 </Hit>
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199 <Hit>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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200 <Hit_num>5</Hit_num>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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201 <Hit_id>gi|3024260|sp|P56514.1|OPSD_BUFBU</Hit_id>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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202 <Hit_def>RecName: Full=Rhodopsin</Hit_def>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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203 <Hit_accession>P56514</Hit_accession>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
diff changeset
204 <Hit_len>354</Hit_len>
0
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peterjc
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205 <Hit_hsps>
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206 <Hsp>
432ea9614cc9 Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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207 <Hsp_num>1</Hsp_num>
13
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
parents: 8
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208 <Hsp_bit-score>619.002</Hsp_bit-score>
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209 <Hsp_score>1595</Hsp_score>
0
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210 <Hsp_evalue>0</Hsp_evalue>
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211 <Hsp_query-from>1</Hsp_query-from>
13
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212 <Hsp_query-to>341</Hsp_query-to>
0
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213 <Hsp_hit-from>1</Hsp_hit-from>
13
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214 <Hsp_hit-to>342</Hsp_hit-to>
0
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215 <Hsp_query-frame>0</Hsp_query-frame>
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216 <Hsp_hit-frame>0</Hsp_hit-frame>
13
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217 <Hsp_identity>290</Hsp_identity>
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218 <Hsp_positive>322</Hsp_positive>
0
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219 <Hsp_gaps>1</Hsp_gaps>
13
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220 <Hsp_align-len>342</Hsp_align-len>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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221 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
peterjc
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222 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq>
4dcc9429d6d2 v0.2.00, updated to depend on BLAST+ 2.5.0
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223 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline>
0
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224 </Hsp>
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225 </Hit_hsps>
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226 </Hit>
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227 <Hit>
13
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228 <Hit_num>6</Hit_num>
0
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229 <Hit_id>gi|12583665|dbj|BAB21486.1|</Hit_id>
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230 <Hit_def>fresh water form rod opsin [Conger myriaster]</Hit_def>
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231 <Hit_accession>BAB21486</Hit_accession>
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232 <Hit_len>354</Hit_len>
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233 <Hit_hsps>
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234 <Hsp>
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235 <Hsp_num>1</Hsp_num>
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236 <Hsp_bit-score>599.356</Hsp_bit-score>
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237 <Hsp_score>1544</Hsp_score>
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238 <Hsp_evalue>0</Hsp_evalue>
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239 <Hsp_query-from>1</Hsp_query-from>
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240 <Hsp_query-to>341</Hsp_query-to>
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241 <Hsp_hit-from>1</Hsp_hit-from>
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242 <Hsp_hit-to>342</Hsp_hit-to>
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243 <Hsp_query-frame>0</Hsp_query-frame>
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244 <Hsp_hit-frame>0</Hsp_hit-frame>
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245 <Hsp_identity>281</Hsp_identity>
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246 <Hsp_positive>314</Hsp_positive>
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247 <Hsp_gaps>1</Hsp_gaps>
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248 <Hsp_align-len>342</Hsp_align-len>
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249 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq>
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250 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq>
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251 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline>
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252 </Hsp>
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253 </Hit_hsps>
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254 </Hit>
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255 </Iteration_hits>
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256 <Iteration_stat>
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257 <Statistics>
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258 <Statistics_db-num>0</Statistics_db-num>
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259 <Statistics_db-len>0</Statistics_db-len>
13
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260 <Statistics_hsp-len>41</Statistics_hsp-len>
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261 <Statistics_eff-space>556591</Statistics_eff-space>
0
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262 <Statistics_kappa>0.041</Statistics_kappa>
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263 <Statistics_lambda>0.267</Statistics_lambda>
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264 <Statistics_entropy>0.14</Statistics_entropy>
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265 </Statistics>
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266 </Iteration_stat>
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267 </Iteration>
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268 </BlastOutput_iterations>
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269 </BlastOutput>
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270