Mercurial > repos > devteam > ncbi_blast_plus
annotate test-data/blastn_rhodopsin_vs_three_human.xml @ 5:188d2aca045b draft
Uploaded v0.1.04, fix regression with BLAST database from history
author | peterjc |
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date | Wed, 22 Jul 2015 04:58:58 -0400 |
parents | 432ea9614cc9 |
children | 0e86300e49c0 |
rev | line source |
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1 <?xml version="1.0"?> |
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
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3 <BlastOutput> |
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4 <BlastOutput_program>blastn</BlastOutput_program> |
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5 <BlastOutput_version>BLASTN 2.2.30+</BlastOutput_version> |
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6 <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference> |
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7 <BlastOutput_db></BlastOutput_db> |
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> |
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9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> |
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10 <BlastOutput_query-len>1047</BlastOutput_query-len> |
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11 <BlastOutput_param> |
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12 <Parameters> |
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13 <Parameters_expect>1e-40</Parameters_expect> |
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14 <Parameters_sc-match>1</Parameters_sc-match> |
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15 <Parameters_sc-mismatch>-2</Parameters_sc-mismatch> |
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16 <Parameters_gap-open>0</Parameters_gap-open> |
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17 <Parameters_gap-extend>0</Parameters_gap-extend> |
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18 <Parameters_filter>L;m;</Parameters_filter> |
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19 </Parameters> |
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20 </BlastOutput_param> |
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21 <BlastOutput_iterations> |
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22 <Iteration> |
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23 <Iteration_iter-num>1</Iteration_iter-num> |
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24 <Iteration_query-ID>Query_1</Iteration_query-ID> |
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25 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> |
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26 <Iteration_query-len>1047</Iteration_query-len> |
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27 <Iteration_hits> |
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28 </Iteration_hits> |
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29 <Iteration_stat> |
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30 <Statistics> |
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31 <Statistics_db-num>0</Statistics_db-num> |
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32 <Statistics_db-len>0</Statistics_db-len> |
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33 <Statistics_hsp-len>15</Statistics_hsp-len> |
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34 <Statistics_eff-space>4933992</Statistics_eff-space> |
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35 <Statistics_kappa>0.46</Statistics_kappa> |
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36 <Statistics_lambda>1.28</Statistics_lambda> |
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37 <Statistics_entropy>0.85</Statistics_entropy> |
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38 </Statistics> |
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39 </Iteration_stat> |
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40 <Iteration_message>No hits found</Iteration_message> |
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41 </Iteration> |
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42 <Iteration> |
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43 <Iteration_iter-num>2</Iteration_iter-num> |
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44 <Iteration_query-ID>Query_1</Iteration_query-ID> |
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45 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> |
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46 <Iteration_query-len>1047</Iteration_query-len> |
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47 <Iteration_hits> |
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48 </Iteration_hits> |
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49 <Iteration_stat> |
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50 <Statistics> |
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51 <Statistics_db-num>0</Statistics_db-num> |
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52 <Statistics_db-len>0</Statistics_db-len> |
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53 <Statistics_hsp-len>15</Statistics_hsp-len> |
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54 <Statistics_eff-space>4933992</Statistics_eff-space> |
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55 <Statistics_kappa>0.46</Statistics_kappa> |
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56 <Statistics_lambda>1.28</Statistics_lambda> |
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57 <Statistics_entropy>0.85</Statistics_entropy> |
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58 </Statistics> |
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59 </Iteration_stat> |
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60 <Iteration_message>No hits found</Iteration_message> |
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61 </Iteration> |
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62 <Iteration> |
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63 <Iteration_iter-num>3</Iteration_iter-num> |
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64 <Iteration_query-ID>Query_1</Iteration_query-ID> |
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65 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> |
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66 <Iteration_query-len>1047</Iteration_query-len> |
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67 <Iteration_hits> |
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68 <Hit> |
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69 <Hit_num>1</Hit_num> |
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70 <Hit_id>Subject_3</Hit_id> |
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71 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> |
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72 <Hit_accession>Subject_3</Hit_accession> |
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73 <Hit_len>1213</Hit_len> |
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74 <Hit_hsps> |
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75 <Hsp> |
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76 <Hsp_num>1</Hsp_num> |
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77 <Hsp_bit-score>1474.75</Hsp_bit-score> |
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78 <Hsp_score>798</Hsp_score> |
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79 <Hsp_evalue>0</Hsp_evalue> |
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80 <Hsp_query-from>1</Hsp_query-from> |
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81 <Hsp_query-to>1047</Hsp_query-to> |
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82 <Hsp_hit-from>88</Hsp_hit-from> |
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83 <Hsp_hit-to>1134</Hsp_hit-to> |
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84 <Hsp_query-frame>1</Hsp_query-frame> |
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85 <Hsp_hit-frame>1</Hsp_hit-frame> |
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86 <Hsp_identity>964</Hsp_identity> |
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87 <Hsp_positive>964</Hsp_positive> |
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88 <Hsp_gaps>0</Hsp_gaps> |
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89 <Hsp_align-len>1047</Hsp_align-len> |
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90 <Hsp_qseq>ATGAACGGGACGGAGGGCCCGAACTTCTACGTGCCCTTCTCCAACAAAACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTCCTGCTCATCGTGCTTGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACGGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCTGACCTCTTCATGGTCTTCGGTGGCTTCACCACCACCCTCTACACCTCTCTGCATGGATACTTTGTCTTTGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACACTGGGCGGTGAAATTGCCCTGTGGTCTTTGGTGGTCCTGGCCATTGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCATGCCATAATGGGCGTCGCTTTCACCTGGGTCATGGCACTGGCCTGCGCTGCACCCCCCCTCGTTGGTTGGTCCAGGTACATCCCTGAAGGCATGCAGTGTTCATGCGGGATCGACTACTACACACTCAAGCCAGAAGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATCGTCATCTTCTTTTGCTACGGGCAGCTTGTCTTCACAGTCAAGGAGGCGGCAGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCTGAGAAGGAGGTCACTCGCATGGTCATCATCATGGTCATTGCTTTCCTGATCTGTTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGGTCCAACTTTGGCCCCATCTTCATGACACTCCCGGCGTTCTTCGCAAAGTCCTCCTCCATCTACAACCCTGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACTACCCTCTGCTGTGGCAAGAACCCACTGGGTGATGACGAGGCTTCCACAACCGGTTCCAAGACGGAGACCAGCCAGGTGGCACCGGCCTAA</Hsp_qseq> |
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91 <Hsp_hseq>ATGAATGGCACAGAAGGCCCTAACTTCTACGTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGATGAGGCCTCTGCTACCGTGTCCAAGACGGAGACGAGCCAGGTGGCCCCGGCCTAA</Hsp_hseq> |
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92 <Hsp_midline>||||| || || || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| |||||||| |||| || ||||||||||||||||| || ||| ||||||| || || || |||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| |||||||| || ||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| || ||||| || | |||| |||||||||||||| ||||||||||| |||||||||</Hsp_midline> |
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93 </Hsp> |
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94 </Hit_hsps> |
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95 </Hit> |
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96 </Iteration_hits> |
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97 <Iteration_stat> |
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98 <Statistics> |
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99 <Statistics_db-num>0</Statistics_db-num> |
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100 <Statistics_db-len>0</Statistics_db-len> |
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101 <Statistics_hsp-len>15</Statistics_hsp-len> |
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102 <Statistics_eff-space>4933992</Statistics_eff-space> |
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103 <Statistics_kappa>0.46</Statistics_kappa> |
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104 <Statistics_lambda>1.28</Statistics_lambda> |
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105 <Statistics_entropy>0.85</Statistics_entropy> |
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106 </Statistics> |
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107 </Iteration_stat> |
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108 </Iteration> |
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109 <Iteration> |
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110 <Iteration_iter-num>4</Iteration_iter-num> |
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111 <Iteration_query-ID>Query_2</Iteration_query-ID> |
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112 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> |
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113 <Iteration_query-len>1574</Iteration_query-len> |
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114 <Iteration_hits> |
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115 </Iteration_hits> |
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116 <Iteration_stat> |
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117 <Statistics> |
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118 <Statistics_db-num>0</Statistics_db-num> |
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119 <Statistics_db-len>0</Statistics_db-len> |
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120 <Statistics_hsp-len>15</Statistics_hsp-len> |
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121 <Statistics_eff-space>7453579</Statistics_eff-space> |
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122 <Statistics_kappa>0.46</Statistics_kappa> |
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123 <Statistics_lambda>1.28</Statistics_lambda> |
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124 <Statistics_entropy>0.85</Statistics_entropy> |
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125 </Statistics> |
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126 </Iteration_stat> |
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127 <Iteration_message>No hits found</Iteration_message> |
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128 </Iteration> |
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129 <Iteration> |
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130 <Iteration_iter-num>5</Iteration_iter-num> |
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131 <Iteration_query-ID>Query_2</Iteration_query-ID> |
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132 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> |
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133 <Iteration_query-len>1574</Iteration_query-len> |
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134 <Iteration_hits> |
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135 </Iteration_hits> |
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136 <Iteration_stat> |
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137 <Statistics> |
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138 <Statistics_db-num>0</Statistics_db-num> |
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139 <Statistics_db-len>0</Statistics_db-len> |
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140 <Statistics_hsp-len>15</Statistics_hsp-len> |
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141 <Statistics_eff-space>7453579</Statistics_eff-space> |
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142 <Statistics_kappa>0.46</Statistics_kappa> |
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143 <Statistics_lambda>1.28</Statistics_lambda> |
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144 <Statistics_entropy>0.85</Statistics_entropy> |
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145 </Statistics> |
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146 </Iteration_stat> |
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147 <Iteration_message>No hits found</Iteration_message> |
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148 </Iteration> |
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149 <Iteration> |
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150 <Iteration_iter-num>6</Iteration_iter-num> |
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151 <Iteration_query-ID>Query_2</Iteration_query-ID> |
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152 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> |
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153 <Iteration_query-len>1574</Iteration_query-len> |
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154 <Iteration_hits> |
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155 </Iteration_hits> |
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156 <Iteration_stat> |
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157 <Statistics> |
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158 <Statistics_db-num>0</Statistics_db-num> |
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159 <Statistics_db-len>0</Statistics_db-len> |
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160 <Statistics_hsp-len>15</Statistics_hsp-len> |
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161 <Statistics_eff-space>7453579</Statistics_eff-space> |
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162 <Statistics_kappa>0.46</Statistics_kappa> |
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163 <Statistics_lambda>1.28</Statistics_lambda> |
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164 <Statistics_entropy>0.85</Statistics_entropy> |
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165 </Statistics> |
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166 </Iteration_stat> |
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167 <Iteration_message>No hits found</Iteration_message> |
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168 </Iteration> |
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169 <Iteration> |
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170 <Iteration_iter-num>7</Iteration_iter-num> |
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171 <Iteration_query-ID>Query_3</Iteration_query-ID> |
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172 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> |
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173 <Iteration_query-len>4301</Iteration_query-len> |
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174 <Iteration_hits> |
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175 </Iteration_hits> |
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176 <Iteration_stat> |
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177 <Statistics> |
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178 <Statistics_db-num>0</Statistics_db-num> |
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179 <Statistics_db-len>0</Statistics_db-len> |
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180 <Statistics_hsp-len>16</Statistics_hsp-len> |
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181 <Statistics_eff-space>20482300</Statistics_eff-space> |
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182 <Statistics_kappa>0.46</Statistics_kappa> |
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183 <Statistics_lambda>1.28</Statistics_lambda> |
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184 <Statistics_entropy>0.85</Statistics_entropy> |
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185 </Statistics> |
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186 </Iteration_stat> |
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187 <Iteration_message>No hits found</Iteration_message> |
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188 </Iteration> |
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189 <Iteration> |
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190 <Iteration_iter-num>8</Iteration_iter-num> |
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191 <Iteration_query-ID>Query_3</Iteration_query-ID> |
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192 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> |
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193 <Iteration_query-len>4301</Iteration_query-len> |
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194 <Iteration_hits> |
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195 </Iteration_hits> |
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196 <Iteration_stat> |
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197 <Statistics> |
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198 <Statistics_db-num>0</Statistics_db-num> |
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199 <Statistics_db-len>0</Statistics_db-len> |
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200 <Statistics_hsp-len>16</Statistics_hsp-len> |
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201 <Statistics_eff-space>20482300</Statistics_eff-space> |
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202 <Statistics_kappa>0.46</Statistics_kappa> |
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203 <Statistics_lambda>1.28</Statistics_lambda> |
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204 <Statistics_entropy>0.85</Statistics_entropy> |
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205 </Statistics> |
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206 </Iteration_stat> |
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207 <Iteration_message>No hits found</Iteration_message> |
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208 </Iteration> |
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209 <Iteration> |
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210 <Iteration_iter-num>9</Iteration_iter-num> |
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211 <Iteration_query-ID>Query_3</Iteration_query-ID> |
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212 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> |
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213 <Iteration_query-len>4301</Iteration_query-len> |
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214 <Iteration_hits> |
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215 <Hit> |
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216 <Hit_num>1</Hit_num> |
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217 <Hit_id>Subject_3</Hit_id> |
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218 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> |
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219 <Hit_accession>Subject_3</Hit_accession> |
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220 <Hit_len>1213</Hit_len> |
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221 <Hit_hsps> |
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222 <Hsp> |
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223 <Hsp_num>1</Hsp_num> |
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224 <Hsp_bit-score>460.936</Hsp_bit-score> |
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225 <Hsp_score>249</Hsp_score> |
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226 <Hsp_evalue>3.59583e-132</Hsp_evalue> |
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227 <Hsp_query-from>1</Hsp_query-from> |
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228 <Hsp_query-to>333</Hsp_query-to> |
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229 <Hsp_hit-from>118</Hsp_hit-from> |
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230 <Hsp_hit-to>450</Hsp_hit-to> |
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231 <Hsp_query-frame>1</Hsp_query-frame> |
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232 <Hsp_hit-frame>1</Hsp_hit-frame> |
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233 <Hsp_identity>305</Hsp_identity> |
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234 <Hsp_positive>305</Hsp_positive> |
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235 <Hsp_gaps>0</Hsp_gaps> |
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236 <Hsp_align-len>333</Hsp_align-len> |
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237 <Hsp_qseq>GTGCCCTTCTCCAACAAGACAGGCGTGGTGCGCAGTCCCTTCGAGCATCCACAGTACTACCTGGCCGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTCGGCTTCCCCATCAACTTCCTCACGCTCTATGTCACGGTTCAGCACAAGAAGCTGCGTACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCCGACCTCTTCATGGTCTTCGGAGGCTTCACCACCACCCTCTACACCTCCCTGCATGGATACTTTGTCTTCGGGCCTACGGGATGCAATCTGGAGGGCTTTTTTGCCACCCTGGGAGGT</Hsp_qseq> |
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238 <Hsp_hseq>GTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGT</Hsp_hseq> |
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239 <Hsp_midline>|||||||||||||| ||| || ||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | || |||||||||| ||||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |||||||||| |||||||||||||| |||</Hsp_midline> |
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240 </Hsp> |
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241 <Hsp> |
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242 <Hsp_num>2</Hsp_num> |
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243 <Hsp_bit-score>331.671</Hsp_bit-score> |
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244 <Hsp_score>179</Hsp_score> |
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245 <Hsp_evalue>2.94161e-93</Hsp_evalue> |
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246 <Hsp_query-from>3127</Hsp_query-from> |
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247 <Hsp_query-to>3368</Hsp_query-to> |
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248 <Hsp_hit-from>782</Hsp_hit-from> |
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249 <Hsp_hit-to>1023</Hsp_hit-to> |
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250 <Hsp_query-frame>1</Hsp_query-frame> |
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251 <Hsp_hit-frame>1</Hsp_hit-frame> |
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252 <Hsp_identity>222</Hsp_identity> |
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253 <Hsp_positive>222</Hsp_positive> |
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254 <Hsp_gaps>2</Hsp_gaps> |
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255 <Hsp_align-len>243</Hsp_align-len> |
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256 <Hsp_qseq>AGGCAGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAGGTCACCCGTATGGTCATCATCATGGTCATTGCTTTCCTAATCTGTTGGCTGCCGTATGCCGGCGTGGCATTCTACATCTTCACCCACCAGGGCTCTAACTTTGGCCCCATCTTCATGACCCTCCCGGCATTCTTTGCCAAG-TCGTCCTCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAG</Hsp_qseq> |
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257 <Hsp_hseq>AGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCG-CCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAG</Hsp_hseq> |
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258 <Hsp_midline>|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| |||| || ||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |||| || |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||</Hsp_midline> |
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259 </Hsp> |
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260 <Hsp> |
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261 <Hsp_num>3</Hsp_num> |
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262 <Hsp_bit-score>265.191</Hsp_bit-score> |
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263 <Hsp_score>143</Hsp_score> |
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264 <Hsp_evalue>3.02604e-73</Hsp_evalue> |
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265 <Hsp_query-from>1410</Hsp_query-from> |
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266 <Hsp_query-to>1582</Hsp_query-to> |
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267 <Hsp_hit-from>448</Hsp_hit-from> |
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268 <Hsp_hit-to>620</Hsp_hit-to> |
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269 <Hsp_query-frame>1</Hsp_query-frame> |
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270 <Hsp_hit-frame>1</Hsp_hit-frame> |
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271 <Hsp_identity>163</Hsp_identity> |
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272 <Hsp_positive>163</Hsp_positive> |
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273 <Hsp_gaps>0</Hsp_gaps> |
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274 <Hsp_align-len>173</Hsp_align-len> |
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275 <Hsp_qseq>GGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTATGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCCTTGCCCTCACCTGGGTCATGGCACTGGCCTGCGCCGCGCCCCCGCTAGTCGGCTGGTCCAGGTA</Hsp_qseq> |
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276 <Hsp_hseq>GGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTA</Hsp_hseq> |
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277 <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||| || | |||||||||||||||</Hsp_midline> |
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278 </Hsp> |
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279 <Hsp> |
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280 <Hsp_num>4</Hsp_num> |
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281 <Hsp_bit-score>248.571</Hsp_bit-score> |
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282 <Hsp_score>134</Hsp_score> |
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|
283 <Hsp_evalue>3.04752e-68</Hsp_evalue> |
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284 <Hsp_query-from>2854</Hsp_query-from> |
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285 <Hsp_query-to>3023</Hsp_query-to> |
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286 <Hsp_hit-from>615</Hsp_hit-from> |
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287 <Hsp_hit-to>784</Hsp_hit-to> |
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288 <Hsp_query-frame>1</Hsp_query-frame> |
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289 <Hsp_hit-frame>1</Hsp_hit-frame> |
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290 <Hsp_identity>158</Hsp_identity> |
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291 <Hsp_positive>158</Hsp_positive> |
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parents:
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292 <Hsp_gaps>0</Hsp_gaps> |
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293 <Hsp_align-len>170</Hsp_align-len> |
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294 <Hsp_qseq>CAGGTACATCCCAGAGGGCATGCAGTGCTCATGTGGAATCGACTACTACACCCTCAAGCCGGAGGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCTATGATTGTCATATTCTTTTGCTATGGACAGCTGGTCTTCACCGTCAAGGAGG</Hsp_qseq> |
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295 <Hsp_hseq>CAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGG</Hsp_hseq> |
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296 <Hsp_midline>|||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| || || |||||||| ||||| |||||||||||||||||||</Hsp_midline> |
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297 </Hsp> |
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298 </Hit_hsps> |
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299 </Hit> |
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300 </Iteration_hits> |
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301 <Iteration_stat> |
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302 <Statistics> |
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303 <Statistics_db-num>0</Statistics_db-num> |
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304 <Statistics_db-len>0</Statistics_db-len> |
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305 <Statistics_hsp-len>16</Statistics_hsp-len> |
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306 <Statistics_eff-space>20482300</Statistics_eff-space> |
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307 <Statistics_kappa>0.46</Statistics_kappa> |
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308 <Statistics_lambda>1.28</Statistics_lambda> |
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309 <Statistics_entropy>0.85</Statistics_entropy> |
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310 </Statistics> |
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311 </Iteration_stat> |
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312 </Iteration> |
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313 <Iteration> |
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314 <Iteration_iter-num>10</Iteration_iter-num> |
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315 <Iteration_query-ID>Query_4</Iteration_query-ID> |
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316 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> |
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317 <Iteration_query-len>983</Iteration_query-len> |
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318 <Iteration_hits> |
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319 </Iteration_hits> |
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320 <Iteration_stat> |
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321 <Statistics> |
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322 <Statistics_db-num>0</Statistics_db-num> |
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323 <Statistics_db-len>0</Statistics_db-len> |
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324 <Statistics_hsp-len>15</Statistics_hsp-len> |
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325 <Statistics_eff-space>4628008</Statistics_eff-space> |
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326 <Statistics_kappa>0.46</Statistics_kappa> |
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327 <Statistics_lambda>1.28</Statistics_lambda> |
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328 <Statistics_entropy>0.85</Statistics_entropy> |
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329 </Statistics> |
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330 </Iteration_stat> |
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331 <Iteration_message>No hits found</Iteration_message> |
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332 </Iteration> |
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333 <Iteration> |
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334 <Iteration_iter-num>11</Iteration_iter-num> |
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335 <Iteration_query-ID>Query_4</Iteration_query-ID> |
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336 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> |
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337 <Iteration_query-len>983</Iteration_query-len> |
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338 <Iteration_hits> |
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339 </Iteration_hits> |
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340 <Iteration_stat> |
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341 <Statistics> |
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342 <Statistics_db-num>0</Statistics_db-num> |
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343 <Statistics_db-len>0</Statistics_db-len> |
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344 <Statistics_hsp-len>15</Statistics_hsp-len> |
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345 <Statistics_eff-space>4628008</Statistics_eff-space> |
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346 <Statistics_kappa>0.46</Statistics_kappa> |
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347 <Statistics_lambda>1.28</Statistics_lambda> |
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348 <Statistics_entropy>0.85</Statistics_entropy> |
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349 </Statistics> |
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350 </Iteration_stat> |
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351 <Iteration_message>No hits found</Iteration_message> |
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352 </Iteration> |
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353 <Iteration> |
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354 <Iteration_iter-num>12</Iteration_iter-num> |
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355 <Iteration_query-ID>Query_4</Iteration_query-ID> |
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356 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> |
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357 <Iteration_query-len>983</Iteration_query-len> |
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358 <Iteration_hits> |
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359 <Hit> |
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360 <Hit_num>1</Hit_num> |
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361 <Hit_id>Subject_3</Hit_id> |
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362 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> |
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363 <Hit_accession>Subject_3</Hit_accession> |
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364 <Hit_len>1213</Hit_len> |
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365 <Hit_hsps> |
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366 <Hsp> |
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367 <Hsp_num>1</Hsp_num> |
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368 <Hsp_bit-score>1323.32</Hsp_bit-score> |
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369 <Hsp_score>716</Hsp_score> |
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370 <Hsp_evalue>0</Hsp_evalue> |
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371 <Hsp_query-from>1</Hsp_query-from> |
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372 <Hsp_query-to>959</Hsp_query-to> |
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373 <Hsp_hit-from>118</Hsp_hit-from> |
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374 <Hsp_hit-to>1076</Hsp_hit-to> |
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375 <Hsp_query-frame>1</Hsp_query-frame> |
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376 <Hsp_hit-frame>1</Hsp_hit-frame> |
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377 <Hsp_identity>878</Hsp_identity> |
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378 <Hsp_positive>878</Hsp_positive> |
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379 <Hsp_gaps>0</Hsp_gaps> |
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380 <Hsp_align-len>959</Hsp_align-len> |
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|
381 <Hsp_qseq>GTGCCCTTCTCCAACAAGACGGGTGTGGTGCGCAGCCCCTTCGAGTACCCGCAGTACTACCTGGCTGAGCCCTGGCAGTTCTCCATGCTGGCTGCCTACATGTTTCTGCTGATCGTGCTCGGATTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCTGTGGCCAACCTCTTCATGGTCTTTGGAGGCTTCACCACCACCCTGTATACCTCTATGCATGGATACTTCGTCTTCGGGGCCACGGGATGCAATCTGGAGGGCTTCTTTGCCACGCTGGGCGGTGAAATCGCCCTGTGGTCCCTGGTGGTCCTGGCCATCGAGCGGTATGTGGTGGTCTGCAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCACGCCATCATGGGCCTCGCCTTCACGTGGGTCATGGCACTGGCCTGCGCTGCACCCCCACTAGCCGGCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGCTCGTGTGGGATTGACTACTACACGCTCAAACCGGAGGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTGTCATTTTCTTCTGCTACGGACAGCTGGTGTTCACAGTGAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAAGTCACGCGCATGGTCATCATCATGGTCGTTGCGTTCCTAATCTGTTGGCTGCCCTACGCCAGCGTGGCATTCTACATCTTTACCCACCAGGGCTCTAACTTTGGCCCTGTCTTCATGACCATCCCGGCATTCTTCGCCAAGTCATCCTCCATCTACAACCCGGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCCTCTGCTGTGGCAAGAACCCACTGGGTGA</Hsp_qseq> |
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382 <Hsp_hseq>GTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGA</Hsp_hseq> |
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|
383 <Hsp_midline>|||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| | || |||||||||| |||||| || |||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| || ||||| || ||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||| | || ||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||||||| || ||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||</Hsp_midline> |
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384 </Hsp> |
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385 </Hit_hsps> |
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386 </Hit> |
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387 </Iteration_hits> |
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388 <Iteration_stat> |
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389 <Statistics> |
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390 <Statistics_db-num>0</Statistics_db-num> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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391 <Statistics_db-len>0</Statistics_db-len> |
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392 <Statistics_hsp-len>15</Statistics_hsp-len> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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393 <Statistics_eff-space>4628008</Statistics_eff-space> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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394 <Statistics_kappa>0.46</Statistics_kappa> |
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395 <Statistics_lambda>1.28</Statistics_lambda> |
432ea9614cc9
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396 <Statistics_entropy>0.85</Statistics_entropy> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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397 </Statistics> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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398 </Iteration_stat> |
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399 </Iteration> |
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400 <Iteration> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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401 <Iteration_iter-num>13</Iteration_iter-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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402 <Iteration_query-ID>Query_5</Iteration_query-ID> |
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403 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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404 <Iteration_query-len>1047</Iteration_query-len> |
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405 <Iteration_hits> |
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406 </Iteration_hits> |
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407 <Iteration_stat> |
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408 <Statistics> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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409 <Statistics_db-num>0</Statistics_db-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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410 <Statistics_db-len>0</Statistics_db-len> |
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411 <Statistics_hsp-len>15</Statistics_hsp-len> |
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412 <Statistics_eff-space>4933992</Statistics_eff-space> |
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413 <Statistics_kappa>0.46</Statistics_kappa> |
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414 <Statistics_lambda>1.28</Statistics_lambda> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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415 <Statistics_entropy>0.85</Statistics_entropy> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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416 </Statistics> |
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417 </Iteration_stat> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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418 <Iteration_message>No hits found</Iteration_message> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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419 </Iteration> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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420 <Iteration> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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421 <Iteration_iter-num>14</Iteration_iter-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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422 <Iteration_query-ID>Query_5</Iteration_query-ID> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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423 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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424 <Iteration_query-len>1047</Iteration_query-len> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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425 <Iteration_hits> |
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426 </Iteration_hits> |
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peterjc
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427 <Iteration_stat> |
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428 <Statistics> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
429 <Statistics_db-num>0</Statistics_db-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
430 <Statistics_db-len>0</Statistics_db-len> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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431 <Statistics_hsp-len>15</Statistics_hsp-len> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
432 <Statistics_eff-space>4933992</Statistics_eff-space> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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433 <Statistics_kappa>0.46</Statistics_kappa> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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|
434 <Statistics_lambda>1.28</Statistics_lambda> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
435 <Statistics_entropy>0.85</Statistics_entropy> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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436 </Statistics> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
437 </Iteration_stat> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
438 <Iteration_message>No hits found</Iteration_message> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
439 </Iteration> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
440 <Iteration> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
441 <Iteration_iter-num>15</Iteration_iter-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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442 <Iteration_query-ID>Query_5</Iteration_query-ID> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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443 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
444 <Iteration_query-len>1047</Iteration_query-len> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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diff
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|
445 <Iteration_hits> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
446 <Hit> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
447 <Hit_num>1</Hit_num> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
448 <Hit_id>Subject_3</Hit_id> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
449 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
450 <Hit_accession>Subject_3</Hit_accession> |
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peterjc
parents:
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|
451 <Hit_len>1213</Hit_len> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
452 <Hit_hsps> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
453 <Hsp> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
454 <Hsp_num>1</Hsp_num> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
455 <Hsp_bit-score>1208.83</Hsp_bit-score> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
456 <Hsp_score>654</Hsp_score> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
457 <Hsp_evalue>0</Hsp_evalue> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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458 <Hsp_query-from>1</Hsp_query-from> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
459 <Hsp_query-to>1047</Hsp_query-to> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
460 <Hsp_hit-from>88</Hsp_hit-from> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
461 <Hsp_hit-to>1134</Hsp_hit-to> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
462 <Hsp_query-frame>1</Hsp_query-frame> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
463 <Hsp_hit-frame>1</Hsp_hit-frame> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
464 <Hsp_identity>917</Hsp_identity> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
465 <Hsp_positive>917</Hsp_positive> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
466 <Hsp_gaps>2</Hsp_gaps> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
467 <Hsp_align-len>1048</Hsp_align-len> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
468 <Hsp_qseq>ATGAACGGGACCGAGGGCCCAAACTTCTACGTGCCTTTCTCCAACAAGACGGGCGTCGTACGCAGCCCCTTCGAGGCGCCGCAGTACTACCTGGCTGAGCCATGGCAGTTCAGCATGCTGGCCGCCTACATGTTCCTGCTGATCATGCTTGGCTTCCCCATCAACTTCCTCACGCTGTACGTCACAGTCCAGCACAAGAAGCTGAGGACCCCCCTCAACTACATCCTGCTCAACCTGGCCGTGGCAGATCTCTTCATGGTGTTCGGGGGCTTCACCACCACCCTGTATACCTCTCTGCACGGGTACTTCGTGTTCGGTCCGACGGGCTGCAACCTCGAGGGCTTCTTTGCCACCTTAGGCGGTGAAATTGCACTGTGGTCCTTGGTGGTGCTAGCCATCGAGCGGTACGTAGTGGTGTGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCGTCGCATTCACCTGGGTCATGGCTCTGGCCTGTGCGGCCCCCCCCCTCGTCGGCTGGTCTAGATACATCCCGGAGGGGATGCAGTGCTCGTGCGGGATCGATTACTACACGCCCCACGAGGAGACCAACAATGAGTCGTTCGTCATCTACATGTTCGTTGTACACTTCATCATCCCCCTGATTGTCATATTCTTCTGCTACGGGCAGCTGGTCTTCACCGTCAAGGAGGCTGCAGCCCAGCAGCAGGAGTCGGCCACCACTCAGAAGGCCGAGAAGGAGGTCACGCGTATGGTCATCATCATGGTCATCGCTTTCCTCATATGCTGGCTGCCCTACGCAGGTGTGGCGTTCTACATCTTCACCCATCAGGGATCCGACTTTGGCCCCATCTTCATGACCATCCCGGCTTTCTTTGCCAAGA-CGTCTGCCGTCTATAACCCCGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGGTCACCACTCTCTGCTGTGGCAAGAACCCCCTAGGTGACGACGAGGCCTCCACGACCGTGTCCAAGACAGAGACCAGCCAAGTGGCCCCTGCCTAA</Hsp_qseq> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
469 <Hsp_hseq>ATGAATGGCACAGAAGGCCCTAACTTCTACGTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCC-GCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGATGAGGCCTCTGCTACCGTGTCCAAGACGGAGACGAGCCAGGTGGCCCCGGCCTAA</Hsp_hseq> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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|
470 <Hsp_midline>||||| || || || ||||| |||||||||||||| |||||||| |||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || || ||||||||||||||||||||||| |||||||| || ||||||||||| | || |||||||||| |||||| || ||||||||||| || |||||||| ||||| || || || ||||| | |||||||||||||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| || || ||||| |||| ||||||||| || |||||||| ||||| ||||||||||||| || ||||| |||||||||| | | |||| |||||| ||||| || ||||||||||||||||| || ||||||| ||||||| ||||| |||| || |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || |||||| |||||||||| | ||||| ||||||||||||||||| ||||| ||| |||| || |||||||||||||||||||| || ||||||||||||| || | ||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| || |||||||| |||||||| | |||||||||||||| ||||| ||||| |||||||| ||||||</Hsp_midline> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
471 </Hsp> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
472 </Hit_hsps> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
473 </Hit> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
474 </Iteration_hits> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
475 <Iteration_stat> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
476 <Statistics> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
477 <Statistics_db-num>0</Statistics_db-num> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
478 <Statistics_db-len>0</Statistics_db-len> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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479 <Statistics_hsp-len>15</Statistics_hsp-len> |
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480 <Statistics_eff-space>4933992</Statistics_eff-space> |
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481 <Statistics_kappa>0.46</Statistics_kappa> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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482 <Statistics_lambda>1.28</Statistics_lambda> |
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peterjc
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483 <Statistics_entropy>0.85</Statistics_entropy> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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484 </Statistics> |
432ea9614cc9
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485 </Iteration_stat> |
432ea9614cc9
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486 </Iteration> |
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487 <Iteration> |
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488 <Iteration_iter-num>16</Iteration_iter-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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489 <Iteration_query-ID>Query_6</Iteration_query-ID> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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490 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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491 <Iteration_query-len>1344</Iteration_query-len> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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492 <Iteration_hits> |
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493 </Iteration_hits> |
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494 <Iteration_stat> |
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495 <Statistics> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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496 <Statistics_db-num>0</Statistics_db-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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497 <Statistics_db-len>0</Statistics_db-len> |
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peterjc
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498 <Statistics_hsp-len>15</Statistics_hsp-len> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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499 <Statistics_eff-space>6353949</Statistics_eff-space> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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500 <Statistics_kappa>0.46</Statistics_kappa> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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501 <Statistics_lambda>1.28</Statistics_lambda> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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502 <Statistics_entropy>0.85</Statistics_entropy> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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503 </Statistics> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
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504 </Iteration_stat> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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505 <Iteration_message>No hits found</Iteration_message> |
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peterjc
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506 </Iteration> |
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peterjc
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507 <Iteration> |
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peterjc
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508 <Iteration_iter-num>17</Iteration_iter-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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509 <Iteration_query-ID>Query_6</Iteration_query-ID> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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510 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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511 <Iteration_query-len>1344</Iteration_query-len> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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512 <Iteration_hits> |
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513 </Iteration_hits> |
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514 <Iteration_stat> |
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515 <Statistics> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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|
516 <Statistics_db-num>0</Statistics_db-num> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
517 <Statistics_db-len>0</Statistics_db-len> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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518 <Statistics_hsp-len>15</Statistics_hsp-len> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
519 <Statistics_eff-space>6353949</Statistics_eff-space> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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520 <Statistics_kappa>0.46</Statistics_kappa> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
521 <Statistics_lambda>1.28</Statistics_lambda> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
522 <Statistics_entropy>0.85</Statistics_entropy> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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523 </Statistics> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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524 </Iteration_stat> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
525 <Iteration_message>No hits found</Iteration_message> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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526 </Iteration> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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527 <Iteration> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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528 <Iteration_iter-num>18</Iteration_iter-num> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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529 <Iteration_query-ID>Query_6</Iteration_query-ID> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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530 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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531 <Iteration_query-len>1344</Iteration_query-len> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
532 <Iteration_hits> |
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peterjc
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533 </Iteration_hits> |
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peterjc
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|
534 <Iteration_stat> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
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535 <Statistics> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
536 <Statistics_db-num>0</Statistics_db-num> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
537 <Statistics_db-len>0</Statistics_db-len> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
538 <Statistics_hsp-len>15</Statistics_hsp-len> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
539 <Statistics_eff-space>6353949</Statistics_eff-space> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
changeset
|
540 <Statistics_kappa>0.46</Statistics_kappa> |
432ea9614cc9
Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
541 <Statistics_lambda>1.28</Statistics_lambda> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
542 <Statistics_entropy>0.85</Statistics_entropy> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
543 </Statistics> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
544 </Iteration_stat> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
diff
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|
545 <Iteration_message>No hits found</Iteration_message> |
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Uploaded v0.1.02 preview 1, using tool_data_table_conf.xml for loc files, etc
peterjc
parents:
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|
546 </Iteration> |
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peterjc
parents:
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547 </BlastOutput_iterations> |
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peterjc
parents:
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548 </BlastOutput> |
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peterjc
parents:
diff
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|
549 |