Mercurial > repos > devteam > microsats_mutability

diff test-data/ortho_ms_mut.tab @ 0:0530d2a49487 draft

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Imported from capsule None
author devteam
date Tue, 01 Apr 2014 09:13:04 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ortho_ms_mut.tab	Tue Apr 01 09:13:04 2014 -0400
@@ -0,0 +1,75 @@
+#Window	Species_1	Window_Start	Window_End	Species_2	Groupby_Feature	SubGroupby_Feature	Mutability	Count
+5	hg18.chr1	6483	6496	panTro2.chr15	100042575	100042588	trinucleotide	GCT	0.00e+00	4
+10	hg18.chr1	18452	18467	panTro2.chr15	100038029	100038042	mononucleotide	T	4.00e+00	13
+10	hg18.chr1	18452	18467	panTro2.chr15	100038029	100038042	dinucleotide	GT	1.00e+00	5
+12	hg18.chr1	20736	20756	panTro2.chr15_random	1091184	1091198	dinucleotide	TC	9.00e+00	7
+13	hg18.chr1	20799	20812	panTro2.chrUn	1510811	1510831	dinucleotide	TC	1.10e+01	24
+14	hg18.chr1	23384	23405	panTro2.chrUn	1508999	1509025	mononucleotide	A	1.00e+00	15
+14	hg18.chr1	23384	23405	panTro2.chrUn	1508999	1509025	mononucleotide	T	1.30e+01	36
+15	hg18.chr1	25352	25371	panTro2.chr15_random	1087905	1087924	tetranucleotide	AAAT	0.00e+00	4
+16	hg18.chr1	30503	30522	panTro2.chrUn	139457	139482	trinucleotide	TTC	0.00e+00	4
+16	hg18.chr1	30503	30522	panTro2.chrUn	139457	139482	mononucleotide	A	1.00e+00	13
+16	hg18.chr1	30503	30522	panTro2.chrUn	139457	139482	mononucleotide	T	1.85e+01	32
+17	hg18.chr1	34037	34047	panTro2.chrUn	9698527	9698537	mononucleotide	A	4.50e+00	23
+19	hg18.chr1	41728	41741	panTro2.chrUn	9706479	9706495	mononucleotide	A	5.00e+00	23
+19	hg18.chr1	41728	41741	panTro2.chrUn	9706479	9706495	dinucleotide	GT	0.00e+00	16
+20	hg18.chr1	44654	44681	panTro2.chrUn	9709915	9709942	tetranucleotide	TTTC	4.50e+00	21
+22	hg18.chr1	52103	52120	panTro2.chrUn	9718011	9718024	mononucleotide	T	1.00e+00	18
+22	hg18.chr1	52103	52120	panTro2.chrUn	9718011	9718024	dinucleotide	AC	4.00e+00	6
+25	hg18.chr1	63706	63720	panTro2.chrUn	9730896	9730914	mononucleotide	T	1.60e+01	14
+25	hg18.chr1	63706	63720	panTro2.chrUn	9730896	9730914	dinucleotide	TA	0.00e+00	6
+25	hg18.chr1	63706	63720	panTro2.chrUn	9730896	9730914	tetranucleotide	ATAC	9.00e+00	5
+26	hg18.chr1	67038	67059	panTro2.chrUn	9734760	9734777	mononucleotide	A	1.60e+01	17
+27	hg18.chr1	72077	72088	panTro2.chrUn	9742946	9742957	dinucleotide	AC	0.00e+00	5
+28	hg18.chr1	73838	73906	panTro2.chr15	99975357	99975380	tetranucleotide	AAAG	1.44e+02	10
+32	hg18.chr1	81064	81077	panTro2.chrUn	1797471	1797489	mononucleotide	A	2.50e+01	13
+35	hg18.chr1	82527	82541	panTro2.chr1_random	7070707	7070721	mononucleotide	A	0.00e+00	14
+40	hg18.chr1	91199	91212	panTro2.chr1_random	7089889	7089900	mononucleotide	A	4.00e+00	11
+41	hg18.chr1	91538	91554	panTro2.chr1	223998154	223998167	mononucleotide	A	9.00e+00	13
+42	hg18.chr1	95472	95491	panTro2.chr1_random	7092383	7092404	dinucleotide	AT	1.85e+01	22
+42	hg18.chr1	95472	95491	panTro2.chr1_random	7092383	7092404	dinucleotide	AC	3.60e+01	12
+43	hg18.chr1	96802	96815	panTro2.chr1	243988	244001	dinucleotide	TC	0.00e+00	6
+44	hg18.chr1	98409	98425	panTro2.chr1_random	7095323	7095342	mononucleotide	A	9.00e+00	16
+45	hg18.chr1	101230	101250	panTro2.chr1	248453	248467	mononucleotide	A	1.85e+01	25
+45	hg18.chr1	101230	101250	panTro2.chr1	248453	248467	dinucleotide	GT	4.00e+00	17
+49	hg18.chr1	112974	112995	panTro2.chr1	262299	262320	trinucleotide	TAA	4.00e+00	4
+49	hg18.chr1	112974	112995	panTro2.chr1	262299	262320	dinucleotide	TA	5.00e-01	15
+49	hg18.chr1	112974	112995	panTro2.chr1	262299	262320	mononucleotide	T	9.00e+00	15
+49	hg18.chr1	112974	112995	panTro2.chr1	262299	262320	dinucleotide	CA	1.00e+00	5
+55	hg18.chr1	114709	114728	panTro2.chr1	262958	262973	mononucleotide	A	1.60e+01	30
+56	hg18.chr1	120154	120164	panTro2.chr1	269287	269300	mononucleotide	A	8.89e+00	109
+56	hg18.chr1	120154	120164	panTro2.chr1	269287	269300	mononucleotide	T	8.80e+00	89
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	mononucleotide	T	3.65e+01	65
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	trinucleotide	GTG	0.00e+00	8
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	trinucleotide	AAC	0.00e+00	21
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	mononucleotide	A	8.33e+00	52
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	trinucleotide	TTA	0.00e+00	4
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	trinucleotide	AAT	0.00e+00	25
+73	hg18.chr1	145718	145733	panTro2.chr1_random	7202121	7202135	mononucleotide	A	1.00e+00	14
+74	hg18.chr1	146971	146985	panTro2.chr1_random	7209449	7209463	mononucleotide	A	2.00e+00	24
+74	hg18.chr1	146971	146985	panTro2.chr1_random	7209449	7209463	mononucleotide	T	4.00e+00	10
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	mononucleotide	T	4.00e+00	16
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	tetranucleotide	GGAG	0.00e+00	16
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	tetranucleotide	TTTA	0.00e+00	24
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	pentanucleotide	AAAAC	1.00e+00	8
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	mononucleotide	A	3.00e+00	61
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	dinucleotide	AC	0.00e+00	34
+76	hg18.chr1	160798	160818	panTro2.chr1	224075335	224075355	mononucleotide	T	2.50e+01	13
+76	hg18.chr1	160798	160818	panTro2.chr1	224075335	224075355	pentanucleotide	GTTTT	0.00e+00	4
+77	hg18.chr1	165310	165322	panTro2.chr1_random	7295748	7295770	mononucleotide	A	1.00e+02	24
+77	hg18.chr1	165310	165322	panTro2.chr1_random	7295748	7295770	dinucleotide	CA	0.00e+00	10
+78	hg18.chr1	166066	166095	panTro2.chr1	224080667	224080691	pentanucleotide	AAAAC	1.00e+00	4
+83	hg18.chr1	219668	219689	panTro2.chr3	77587413	77587435	tetranucleotide	TAAA	0.00e+00	5
+87	hg18.chr1	222298	222309	panTro2.chrUn	1781936	1781946	mononucleotide	T	1.00e+00	20
+93	hg18.chr1	228854	228869	panTro2.chr1_random	7327066	7327078	mononucleotide	A	2.90e+01	31
+94	hg18.chr1	231193	231209	panTro2.chr1	223990552	223990572	mononucleotide	T	1.60e+01	16
+97	hg18.chr1	237516	237529	panTro2.chr1_random	7333512	7333527	mononucleotide	A	1.00e+01	28
+97	hg18.chr1	237516	237529	panTro2.chr1_random	7333512	7333527	mononucleotide	T	1.60e+01	15
+97	hg18.chr1	237516	237529	panTro2.chr1_random	7333512	7333527	tetranucleotide	TTTA	9.00e+00	7
+98	hg18.chr1	237855	237870	panTro2.chr1	223998154	223998167	mononucleotide	A	4.00e+00	13
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	dinucleotide	AT	2.50e+01	52
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	dinucleotide	TC	1.67e+01	64
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	mononucleotide	A	2.50e+01	34
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	dinucleotide	GT	2.31e+01	114
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	dinucleotide	AC	4.90e+01	34
+100	hg18.chr1	247545	247565	panTro2.chr1_random	7109243	7109259	mononucleotide	A	8.00e+00	26