Mercurial > repos > devteam > microsats_mutability

annotate test-data/ortho_ms_mut.tab @ 2:5e858a07ca85 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/microsats_mutability commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 19:08:34 -0500
parents 0530d2a49487
children
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1 #Window Species_1 Window_Start Window_End Species_2 Groupby_Feature SubGroupby_Feature Mutability Count
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2 5 hg18.chr1 6483 6496 panTro2.chr15 100042575 100042588 trinucleotide GCT 0.00e+00 4
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3 10 hg18.chr1 18452 18467 panTro2.chr15 100038029 100038042 mononucleotide T 4.00e+00 13
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4 10 hg18.chr1 18452 18467 panTro2.chr15 100038029 100038042 dinucleotide GT 1.00e+00 5
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5 12 hg18.chr1 20736 20756 panTro2.chr15_random 1091184 1091198 dinucleotide TC 9.00e+00 7
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6 13 hg18.chr1 20799 20812 panTro2.chrUn 1510811 1510831 dinucleotide TC 1.10e+01 24
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7 14 hg18.chr1 23384 23405 panTro2.chrUn 1508999 1509025 mononucleotide A 1.00e+00 15
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8 14 hg18.chr1 23384 23405 panTro2.chrUn 1508999 1509025 mononucleotide T 1.30e+01 36
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9 15 hg18.chr1 25352 25371 panTro2.chr15_random 1087905 1087924 tetranucleotide AAAT 0.00e+00 4
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10 16 hg18.chr1 30503 30522 panTro2.chrUn 139457 139482 trinucleotide TTC 0.00e+00 4
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11 16 hg18.chr1 30503 30522 panTro2.chrUn 139457 139482 mononucleotide A 1.00e+00 13
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12 16 hg18.chr1 30503 30522 panTro2.chrUn 139457 139482 mononucleotide T 1.85e+01 32
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13 17 hg18.chr1 34037 34047 panTro2.chrUn 9698527 9698537 mononucleotide A 4.50e+00 23
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14 19 hg18.chr1 41728 41741 panTro2.chrUn 9706479 9706495 mononucleotide A 5.00e+00 23
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15 19 hg18.chr1 41728 41741 panTro2.chrUn 9706479 9706495 dinucleotide GT 0.00e+00 16
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16 20 hg18.chr1 44654 44681 panTro2.chrUn 9709915 9709942 tetranucleotide TTTC 4.50e+00 21
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17 22 hg18.chr1 52103 52120 panTro2.chrUn 9718011 9718024 mononucleotide T 1.00e+00 18
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18 22 hg18.chr1 52103 52120 panTro2.chrUn 9718011 9718024 dinucleotide AC 4.00e+00 6
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19 25 hg18.chr1 63706 63720 panTro2.chrUn 9730896 9730914 mononucleotide T 1.60e+01 14
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20 25 hg18.chr1 63706 63720 panTro2.chrUn 9730896 9730914 dinucleotide TA 0.00e+00 6
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21 25 hg18.chr1 63706 63720 panTro2.chrUn 9730896 9730914 tetranucleotide ATAC 9.00e+00 5
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22 26 hg18.chr1 67038 67059 panTro2.chrUn 9734760 9734777 mononucleotide A 1.60e+01 17
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23 27 hg18.chr1 72077 72088 panTro2.chrUn 9742946 9742957 dinucleotide AC 0.00e+00 5
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24 28 hg18.chr1 73838 73906 panTro2.chr15 99975357 99975380 tetranucleotide AAAG 1.44e+02 10
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25 32 hg18.chr1 81064 81077 panTro2.chrUn 1797471 1797489 mononucleotide A 2.50e+01 13
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26 35 hg18.chr1 82527 82541 panTro2.chr1_random 7070707 7070721 mononucleotide A 0.00e+00 14
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27 40 hg18.chr1 91199 91212 panTro2.chr1_random 7089889 7089900 mononucleotide A 4.00e+00 11
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28 41 hg18.chr1 91538 91554 panTro2.chr1 223998154 223998167 mononucleotide A 9.00e+00 13
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29 42 hg18.chr1 95472 95491 panTro2.chr1_random 7092383 7092404 dinucleotide AT 1.85e+01 22
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30 42 hg18.chr1 95472 95491 panTro2.chr1_random 7092383 7092404 dinucleotide AC 3.60e+01 12
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31 43 hg18.chr1 96802 96815 panTro2.chr1 243988 244001 dinucleotide TC 0.00e+00 6
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32 44 hg18.chr1 98409 98425 panTro2.chr1_random 7095323 7095342 mononucleotide A 9.00e+00 16
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33 45 hg18.chr1 101230 101250 panTro2.chr1 248453 248467 mononucleotide A 1.85e+01 25
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34 45 hg18.chr1 101230 101250 panTro2.chr1 248453 248467 dinucleotide GT 4.00e+00 17
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35 49 hg18.chr1 112974 112995 panTro2.chr1 262299 262320 trinucleotide TAA 4.00e+00 4
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36 49 hg18.chr1 112974 112995 panTro2.chr1 262299 262320 dinucleotide TA 5.00e-01 15
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37 49 hg18.chr1 112974 112995 panTro2.chr1 262299 262320 mononucleotide T 9.00e+00 15
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38 49 hg18.chr1 112974 112995 panTro2.chr1 262299 262320 dinucleotide CA 1.00e+00 5
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39 55 hg18.chr1 114709 114728 panTro2.chr1 262958 262973 mononucleotide A 1.60e+01 30
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40 56 hg18.chr1 120154 120164 panTro2.chr1 269287 269300 mononucleotide A 8.89e+00 109
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41 56 hg18.chr1 120154 120164 panTro2.chr1 269287 269300 mononucleotide T 8.80e+00 89
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42 72 hg18.chr1 141348 141361 panTro2.chr1_random 7195790 7195814 mononucleotide T 3.65e+01 65
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43 72 hg18.chr1 141348 141361 panTro2.chr1_random 7195790 7195814 trinucleotide GTG 0.00e+00 8
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44 72 hg18.chr1 141348 141361 panTro2.chr1_random 7195790 7195814 trinucleotide AAC 0.00e+00 21
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45 72 hg18.chr1 141348 141361 panTro2.chr1_random 7195790 7195814 mononucleotide A 8.33e+00 52
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46 72 hg18.chr1 141348 141361 panTro2.chr1_random 7195790 7195814 trinucleotide TTA 0.00e+00 4
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47 72 hg18.chr1 141348 141361 panTro2.chr1_random 7195790 7195814 trinucleotide AAT 0.00e+00 25
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48 73 hg18.chr1 145718 145733 panTro2.chr1_random 7202121 7202135 mononucleotide A 1.00e+00 14
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49 74 hg18.chr1 146971 146985 panTro2.chr1_random 7209449 7209463 mononucleotide A 2.00e+00 24
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50 74 hg18.chr1 146971 146985 panTro2.chr1_random 7209449 7209463 mononucleotide T 4.00e+00 10
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51 75 hg18.chr1 156998 157017 panTro2.chr1_random 7219691 7219710 mononucleotide T 4.00e+00 16
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52 75 hg18.chr1 156998 157017 panTro2.chr1_random 7219691 7219710 tetranucleotide GGAG 0.00e+00 16
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53 75 hg18.chr1 156998 157017 panTro2.chr1_random 7219691 7219710 tetranucleotide TTTA 0.00e+00 24
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54 75 hg18.chr1 156998 157017 panTro2.chr1_random 7219691 7219710 pentanucleotide AAAAC 1.00e+00 8
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55 75 hg18.chr1 156998 157017 panTro2.chr1_random 7219691 7219710 mononucleotide A 3.00e+00 61
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56 75 hg18.chr1 156998 157017 panTro2.chr1_random 7219691 7219710 dinucleotide AC 0.00e+00 34
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57 76 hg18.chr1 160798 160818 panTro2.chr1 224075335 224075355 mononucleotide T 2.50e+01 13
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58 76 hg18.chr1 160798 160818 panTro2.chr1 224075335 224075355 pentanucleotide GTTTT 0.00e+00 4
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59 77 hg18.chr1 165310 165322 panTro2.chr1_random 7295748 7295770 mononucleotide A 1.00e+02 24
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60 77 hg18.chr1 165310 165322 panTro2.chr1_random 7295748 7295770 dinucleotide CA 0.00e+00 10
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61 78 hg18.chr1 166066 166095 panTro2.chr1 224080667 224080691 pentanucleotide AAAAC 1.00e+00 4
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62 83 hg18.chr1 219668 219689 panTro2.chr3 77587413 77587435 tetranucleotide TAAA 0.00e+00 5
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63 87 hg18.chr1 222298 222309 panTro2.chrUn 1781936 1781946 mononucleotide T 1.00e+00 20
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64 93 hg18.chr1 228854 228869 panTro2.chr1_random 7327066 7327078 mononucleotide A 2.90e+01 31
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65 94 hg18.chr1 231193 231209 panTro2.chr1 223990552 223990572 mononucleotide T 1.60e+01 16
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66 97 hg18.chr1 237516 237529 panTro2.chr1_random 7333512 7333527 mononucleotide A 1.00e+01 28
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67 97 hg18.chr1 237516 237529 panTro2.chr1_random 7333512 7333527 mononucleotide T 1.60e+01 15
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68 97 hg18.chr1 237516 237529 panTro2.chr1_random 7333512 7333527 tetranucleotide TTTA 9.00e+00 7
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69 98 hg18.chr1 237855 237870 panTro2.chr1 223998154 223998167 mononucleotide A 4.00e+00 13
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70 99 hg18.chr1 245760 245793 panTro2.chr1_random 7340006 7340026 dinucleotide AT 2.50e+01 52
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71 99 hg18.chr1 245760 245793 panTro2.chr1_random 7340006 7340026 dinucleotide TC 1.67e+01 64
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72 99 hg18.chr1 245760 245793 panTro2.chr1_random 7340006 7340026 mononucleotide A 2.50e+01 34
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73 99 hg18.chr1 245760 245793 panTro2.chr1_random 7340006 7340026 dinucleotide GT 2.31e+01 114
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74 99 hg18.chr1 245760 245793 panTro2.chr1_random 7340006 7340026 dinucleotide AC 4.90e+01 34
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75 100 hg18.chr1 247545 247565 panTro2.chr1_random 7109243 7109259 mononucleotide A 8.00e+00 26