comparison microsats_alignment_level.xml @ 2:1046ff4cef3a draft default tip

planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

1:433660af5d5e

  	microsats_alignment_level.py $input1 $separation $out_file1 "2way" $mono_threshold $non_mono_threshold $allow_different_units
  </command>
  <inputs>
    <page>
    	<param format="fasta" name="input1" type="data" label="Select data"/>
    	<param name="separation" size="10" type="integer" value="10" label="Minimum base pair distance between adjacent microsatellites"
    	help="A value of 10 means: Adjacent microsatellites separated by less than 10 base pairs will be excluded from the output."/>
    	<param name="mono_threshold" size="10" type="integer" value="9" label="Minimum Threshold for the number of repeats for mononucleotide microsatellites"
    	help="A value of 9 means: All mononucleotide microsatellites having fewer than 9 repeats will be excluded from the output."/>
    	<param name="non_mono_threshold" size="10" type="integer" value="4" label="Minimum Threshold for the number of repeats for non-mononucleotide microsatellites"
    	help="A value of 4 means: All non-mononucleotide microsatellites having fewer than 4 repeats will be excluded from the output."/>
    	<param name="allow_different_units" size="5" type="select" label="Allow orthologous positions to have different microsatellite repeat units/motifs?">
    		<option value="0" selected="true">No</option>
          	<option value="1">Yes</option>
         </param>
    </page>
  </inputs>

2:1046ff4cef3a

  	microsats_alignment_level.py $input1 $separation $out_file1 "2way" $mono_threshold $non_mono_threshold $allow_different_units
  </command>
  <inputs>
    <page>
    	<param format="fasta" name="input1" type="data" label="Select data"/>
    	<param name="separation" type="integer" value="10" label="Minimum base pair distance between adjacent microsatellites"
    	help="A value of 10 means: Adjacent microsatellites separated by less than 10 base pairs will be excluded from the output."/>
    	<param name="mono_threshold" type="integer" value="9" label="Minimum Threshold for the number of repeats for mononucleotide microsatellites"
    	help="A value of 9 means: All mononucleotide microsatellites having fewer than 9 repeats will be excluded from the output."/>
    	<param name="non_mono_threshold" type="integer" value="4" label="Minimum Threshold for the number of repeats for non-mononucleotide microsatellites"
    	help="A value of 4 means: All non-mononucleotide microsatellites having fewer than 4 repeats will be excluded from the output."/>
    	<param name="allow_different_units" type="select" label="Allow orthologous positions to have different microsatellite repeat units/motifs?">
    		<option value="0" selected="true">No</option>
          	<option value="1">Yes</option>
         </param>
    </page>
  </inputs>