comparison tool-data/blastdb.loc.sample @ 0:fb0d744e32fa draft

Imported from capsule None

0:fb0d744e32fa

#This is a sample file distributed with Galaxy that is used to define a
#list of nucleotide BLAST databases, using three columns tab separated
#(longer whitespace are TAB characters):
#
#<unique_id>      <database_caption>     <base_name_path>
#
#The captions typically contain spaces and might end with the release date.
#It is important that the actual database name does not have a space in it.
#
#So, for example, if your database is nt and the path to your base name 
#is /galaxy/data/blastdb/nt/DDmmmYYYY/nt, then the blastdb.loc entry 
#could look like this:
#
#02dec2009     nt 02-Dec-2009    /galaxy/data/blastdb/nt/02dec2009/nt
#
#A /galaxy/data/blastdb/nt/02dec2009 directory would contain all of 
#the "nt" blast indexes from ftp://ftp.ncbi.nlm.nih.gov/blast/db/nt* (e.g.):
#
#-rw-r--r--  1 wychung galaxy  23437408 2008-04-09 11:26 nt.chunk.00.nhr
#-rw-r--r--  1 wychung galaxy   3689920 2008-04-09 11:26 nt.chunk.00.nin
#-rw-r--r--  1 wychung galaxy 251215198 2008-04-09 11:26 nt.chunk.00.nsq
#...etc...
#
#The blastdb.loc file should include one entry per line for each database. 
#
#See also blastdb_p.loc, used for protein BLAST database.
#
#Note that for backwards compatibility with workflows, the <unique_id> of
#an entry must be the path that was in the original loc file.
#The metadata <unique_id> is the value stored in workflows for "database".
#