Mercurial > repos > devteam > lastz

view test-data/score_file.txt @ 3:c3767eaae954 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit 13e9724b44888b0de9535ac7b561ad9686038413
author iuc
date Thu, 17 May 2018 04:28:59 -0400
parents 8e9252994649
children
line wrap: on
line source

# This matches the default scoring set for BLASTZ
    
bad_score          = X:-1000  # used for sub['X'][*] and sub[*]['X']
fill_score         = -100     # used when sub[*][*] is not defined
gap_open_penalty   =  400
gap_extend_penalty =   30

     A     C     G     T
A   91  -114   -31  -123
C -114   100  -125   -31
G  -31  -125   100  -114
T -123   -31  -114    91