comparison lastz_macros.xml @ 8:da6f44d06921 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit 1075d38f2a8eaffb824771a5c4fe70c36aa15f2c

7:86f2c3695694

<macros>
    <token name="@TOOL_VERSION@">1.04.15</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@TARGET_INPUT_COMMAND_LINE@"><![CDATA[
        #if $source.ref_source=="history":
            #if $source.target.is_of_type('fasta.gz'):
                <(gunzip -c '${source.target}')

            <xref type="bio.tools">lastz</xref>
        </xrefs>
    </xml>
    <xml name="target_input">
        <conditional name="source">
            <param name="ref_source" type="select" label="Select TARGET sequnce(s) to align against" help="If your TARGET is in history, choose 'from your history' option">
                <option value="cached">locally cached</option>
                <option value="history">from your history</option>
            </param>
            <when value="cached">
                <param name="target_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team">

8:da6f44d06921

<macros>
    <token name="@TOOL_VERSION@">1.04.22</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@TARGET_INPUT_COMMAND_LINE@"><![CDATA[
        #if $source.ref_source=="history":
            #if $source.target.is_of_type('fasta.gz'):
                <(gunzip -c '${source.target}')

            <xref type="bio.tools">lastz</xref>
        </xrefs>
    </xml>
    <xml name="target_input">
        <conditional name="source">
            <param name="ref_source" type="select" label="Select TARGET sequence(s) to align against" help="If your TARGET is in history, choose 'from your history' option">
                <option value="cached">locally cached</option>
                <option value="history">from your history</option>
            </param>
            <when value="cached">
                <param name="target_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team">