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comparison lastz_d.xml @ 3:c3767eaae954 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit 13e9724b44888b0de9535ac7b561ad9686038413
author iuc
date Thu, 17 May 2018 04:28:59 -0400
parents 8e9252994649
children 0acd9701676b
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2:8e9252994649 3:c3767eaae954
1 <tool id="lastz_d_wrapper" name="LASTZ_D" version="1.3"> 1 <tool id="lastz_d_wrapper" name="LASTZ_D" version="1.3.1">
2 <description>: estimate substitution scores matrix</description> 2 <description>: estimate substitution scores matrix</description>
3 <macros> 3 <macros>
4 <import>lastz_macros.xml</import> 4 <import>lastz_macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@LASTZ_CONDA_VERSION@">lastz</requirement> 7 <requirement type="package" version="@LASTZ_CONDA_VERSION@">lastz</requirement>
8 <requirement type="package" version="1.0.6">bzip2</requirement>
8 </requirements> 9 </requirements>
9 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
10 lastz_D 11 lastz_D
11 @TARGET_INPUT_COMMAND_LINE@ 12 @TARGET_INPUT_COMMAND_LINE@
12 '${query}' 13 @query_input@
13 #if $score_file: 14 #if $score_file:
14 '--inferonly=${score_file}' 15 '--inferonly=${score_file}'
15 #else: 16 #else:
16 --inferonly 17 --inferonly
17 #end if 18 #end if