Mercurial > repos > devteam > lastz
comparison tool-data/lastz_seqs.loc.sample @ 1:3c13c9c09ad9 draft
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author | devteam |
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date | Tue, 13 Oct 2015 12:23:37 -0400 |
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0:0bd6b2cb3b2a | 1:3c13c9c09ad9 |
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1 #This is a sample file distributed with Galaxy that enables tools | |
2 #to use a directory of 2bit genome files for use with Lastz. You will | |
3 #need to supply these files and then create a lastz_seqs.loc file | |
4 #similar to this one (store it in this directory) that points to | |
5 #the directories in which those files are stored. The lastz_seqs.loc | |
6 #file has this format (white space characters are TAB characters): | |
7 # | |
8 #<unique_build_id> <display_name> <file_path> | |
9 # | |
10 #So, for example, if your lastz_seqs.loc began like this: | |
11 # | |
12 #hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg18.2bit | |
13 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit | |
14 #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.2bit | |
15 # | |
16 #then your /depot/data2/galaxy/twobit/ directory | |
17 #would need to contain the following 2bit files: | |
18 # | |
19 #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit | |
20 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit | |
21 #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit | |
22 # | |
23 #Your lastz_seqs.loc file should include an entry per line for | |
24 #each file you have stored that you want to be available. Note that | |
25 #your files should all have the extension '2bit'. | |
26 # | |
27 #Note that for backwards compatibility with workflows, the unique ID of | |
28 #an entry must be the path that was in the original loc file, because that | |
29 #is the value stored in the workflow for that parameter. | |
30 # |