# HG changeset patch
# User devteam
# Date 1432068146 14400
# Node ID bb3d55e8ef3d19df976d8744cd9d5de127aa2efd
# Parent  8bbf903bf0cb95e1909ae1650ebaf343f22c912d
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty

diff -r 8bbf903bf0cb -r bb3d55e8ef3d kraken-report.xml
--- a/kraken-report.xml	Wed Apr 22 13:04:06 2015 -0400
+++ b/kraken-report.xml	Tue May 19 16:42:26 2015 -0400
@@ -7,6 +7,7 @@
     </macros>
     <command>
         <![CDATA[
+        @SET_DATABASE_PATH@ &&
         kraken-report @INPUT_DATABASE@ "${kraken_output}" > "$output_report"
         ]]>
     </command>
diff -r 8bbf903bf0cb -r bb3d55e8ef3d macros.xml
--- a/macros.xml	Wed Apr 22 13:04:06 2015 -0400
+++ b/macros.xml	Tue May 19 16:42:26 2015 -0400
@@ -25,5 +25,6 @@
             <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
         </citations>
     </xml>
-    <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.path}/${kraken_database.fields.name}</token>
+    <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token>
+    <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token>
 </macros>
\ No newline at end of file
diff -r 8bbf903bf0cb -r bb3d55e8ef3d tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Apr 22 13:04:06 2015 -0400
+++ b/tool_dependencies.xml	Tue May 19 16:42:26 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="kraken" version="0.10.5">
-      <repository changeset_revision="c949a8bd92ec" name="package_kraken_0_10_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="e79fee8f87fa" name="package_kraken_0_10_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>